Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18m18
(618 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227 180 8e-46
03_05_0805 - 27839576-27839667,27839763-27839823,27840082-278401... 75 3e-14
11_05_0016 - 18410889-18411104,18411326-18411381,18412883-184130... 54 9e-08
03_02_0081 - 5506194-5506197,5506310-5507170,5507299-5507456,550... 41 0.001
01_05_0667 + 24142121-24142319,24142742-24142864,24144522-24144739 38 0.006
06_03_0946 - 26208253-26209075,26209181-26209329,26209525-26209812 34 0.10
04_04_0166 - 23250473-23250746,23251349-23252025 31 0.73
02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467 31 0.97
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792... 29 3.0
12_02_0774 - 23035853-23035900,23036027-23036875,23037732-23037905 27 9.0
04_01_0212 - 2654691-2656976 27 9.0
>04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227
Length = 227
Score = 180 bits (438), Expect = 8e-46
Identities = 87/122 (71%), Positives = 97/122 (79%)
Frame = +2
Query: 251 IRCARPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEE 430
IR A DL+ MQ CNL+CLPENYQMKYY YH LSWPQL +VAED G IVGYVLAKMEE
Sbjct: 4 IRQATIDDLLAMQACNLMCLPENYQMKYYLYHMLSWPQLLFVAEDYGGRIVGYVLAKMEE 63
Query: 431 DGEDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLY 610
D + HGHITSLAV RSHR+LGLA KLM+ A AM + F A+YVSLHVR+SNRAA NLY
Sbjct: 64 DPSEPCHGHITSLAVLRSHRKLGLATKLMSAAQAAMDQVFGAEYVSLHVRRSNRAAFNLY 123
Query: 611 TN 616
T+
Sbjct: 124 TS 125
>03_05_0805 -
27839576-27839667,27839763-27839823,27840082-27840151,
27841167-27841299,27841928-27842018,27842097-27842174
Length = 174
Score = 75.4 bits (177), Expect = 3e-14
Identities = 39/113 (34%), Positives = 60/113 (53%)
Frame = +2
Query: 272 DLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRH 451
DL+ NL L E + M +Y + WP + A ++GY++ K+E GE + H
Sbjct: 11 DLLRFSSVNLDHLTETFNMSFYMTYMARWPDYFHAAVSPGDRVMGYIMGKVEGQGE-SWH 69
Query: 452 GHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLY 610
GH+T+++V RR LA+KLMN + +A +V L VR SN A+ +Y
Sbjct: 70 GHVTAVSVATEFRRQKLAKKLMNLLEEISDKMDKAYFVDLFVRASNMPAIRMY 122
>11_05_0016 -
18410889-18411104,18411326-18411381,18412883-18413009,
18413113-18413307
Length = 197
Score = 54.0 bits (124), Expect = 9e-08
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Frame = +2
Query: 308 LPENYQMKYYFYHGLSWPQLSYVAEDEK-GHIVGYVLAKMEEDGEDNRHGHITSLAVKRS 484
L E Y + Y Y WPQL+++A D K G VG V+ KM E R G+I L V +
Sbjct: 43 LSEPYSIFTYRYFVYLWPQLTFLAFDPKDGKCVGTVVCKMGEHRGAFR-GYIAMLVVLKP 101
Query: 485 HRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLY 610
+R G+A +L+ ++ M+E + V+L +N+ AL LY
Sbjct: 102 YRGRGIATELVTRSIRVMMES-GCEEVTLEAEVTNKGALALY 142
>03_02_0081 -
5506194-5506197,5506310-5507170,5507299-5507456,
5507549-5507740
Length = 404
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +2
Query: 452 GHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYT 613
G+I L V SHRR+GLA +++ + A E A+Y + KSN A+L L+T
Sbjct: 105 GYILGLRVAPSHRRMGLALRMVRRME-AWFERMGAEYAYMATDKSNEASLRLFT 157
>01_05_0667 + 24142121-24142319,24142742-24142864,24144522-24144739
Length = 179
Score = 37.9 bits (84), Expect = 0.006
Identities = 29/116 (25%), Positives = 53/116 (45%)
Frame = +2
Query: 263 RPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGED 442
R ++M ++ N P Y KYY + ++ + S +A VG + ++E+
Sbjct: 30 RDKNVMQLKKLNTALFPVRYNEKYY-HDTIASKEFSKLAY-YSDICVGAIACRLEKKEGG 87
Query: 443 NRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLY 610
+I +L V +R LG+ KL+N + + E + LHV+ +N A+ Y
Sbjct: 88 AVCVYIMTLGVLAPYRSLGIGSKLLNHV-IDLCEKQNIPEIYLHVQTNNDDAIAFY 142
>06_03_0946 - 26208253-26209075,26209181-26209329,26209525-26209812
Length = 419
Score = 33.9 bits (74), Expect = 0.10
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Frame = +2
Query: 371 YVAEDEKGHIVGYVLA---KMEEDGEDNRH----GHITSLAVKRSHRRLGLAQKLMNQAS 529
Y E+EK +VG + A + G+ + ++ L V SHRRLG+ L+ +A
Sbjct: 100 YGEEEEKKKVVGVIKACVKTVSRGGKQEKPFVKVANLLGLRVSPSHRRLGIGTALVRRAE 159
Query: 530 LAMVECFQAKYVSLHVRKSNRAALNLYT 613
V A++ ++ +SN A+L L+T
Sbjct: 160 EWCV-ARGAEHATMATTESNAASLALFT 186
>04_04_0166 - 23250473-23250746,23251349-23252025
Length = 316
Score = 31.1 bits (67), Expect = 0.73
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +2
Query: 455 HITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLY 610
+I ++ VK S RR G+ ++L+ +++ ++V LH R ++ N+Y
Sbjct: 214 YICNMTVKTSLRRRGIGKQLLKACEDLIIKMDAKRHVYLHCRIIDQVPFNMY 265
>02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467
Length = 421
Score = 30.7 bits (66), Expect = 0.97
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 458 ITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLY 610
+ L V SHRRLG+A +L+ +A A Y ++ SN A+L L+
Sbjct: 124 LLGLRVSPSHRRLGIATELVRRAE-EWCAARGAAYATMATTASNAASLALF 173
>11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,
7921808-7922407
Length = 1071
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 461 TSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLH-VRKSNRAALN 604
T + VKRS+ RLG+ ++ N+ S+ M+E S++ + K + LN
Sbjct: 854 TYVQVKRSNGRLGVYKEFSNEVSMLMLEADPQNATSIYNLHKDAKDKLN 902
>12_02_0774 - 23035853-23035900,23036027-23036875,23037732-23037905
Length = 356
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 431 DGEDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAA 598
DG+ G++ L V HRR G+ KL+ VE + A++ + HV + AA
Sbjct: 86 DGDTVLAGYVLGLRVSPVHRRKGIGLKLVES-----VEAWAARHGARHVVAAADAA 136
>04_01_0212 - 2654691-2656976
Length = 761
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 401 VGYVLAKMEED-GEDNRHGHITSLAVKRSHRRLGLAQK 511
VGY L +E ++ HG++T VK +HR + + QK
Sbjct: 563 VGYALTNDDEILPKEEYHGNLTEKKVKLAHRLVEMEQK 600
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,172,378
Number of Sequences: 37544
Number of extensions: 279170
Number of successful extensions: 610
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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