Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18m11
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    26   3.7  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   8.6  

>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -2

Query: 360 GIKLMNNL*RGTSSAACRRAPTT---GYLMYFTIRSICSSTRGLVPLKAAGCGPTSATSG 190
           G   +N L   TSS+A    PTT   GY   F + S  S+T     L      PT+A S 
Sbjct: 369 GFNSLNQL--PTSSSAFTPQPTTFNTGYTSAFGMSSGLSNTSSQAGLGLTSQQPTAAKSS 426

Query: 189 GT 184
           G+
Sbjct: 427 GS 428


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 330 RVKDCSLILFQLLERKRRANISCMRK 407
           R  DCS++    L  K+  ++SC+ K
Sbjct: 281 RFSDCSILQLHSLVEKKYVSLSCLSK 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,787,969
Number of Sequences: 5004
Number of extensions: 26977
Number of successful extensions: 54
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)