Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18m11
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   4.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   5.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.2  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   7.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.5  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = -1

Query: 433 LFY*FILSSLRIHEMFARRLRSNNWNKINEQSLTRHLVCSVSTRANYRLLDVLHDQIYLF 254
           LFY  +LSS+R HE   R        K+N +SL  +        A  R+  V     +LF
Sbjct: 238 LFYSRLLSSIRNHEKMLR----EQAKKMNVKSLVSNQ--DKERSAEVRIAKVAFTIFFLF 291

Query: 253 VDAGT 239
           + A T
Sbjct: 292 LLAWT 296


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = -1

Query: 433 LFY*FILSSLRIHEMFARRLRSNNWNKINEQSLTRHLVCSVSTRANYRLLDVLHDQIYLF 254
           LFY  +LSS+R HE   R        K+N +SL  +        A  R+  V     +LF
Sbjct: 238 LFYSRLLSSIRNHEKMLR----EQAKKMNVKSLVSNQ--DKERSAEVRIAKVAFTIFFLF 291

Query: 253 VDAGT 239
           + A T
Sbjct: 292 LLAWT 296


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 325 LVCSVSTRANYRLLDVLHDQI 263
           L+C+V    NY LL+ +++ +
Sbjct: 108 LLCNVEAEENYNLLEDIYETL 128


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 390 CSHDVYVLTIGIKLMNNL*RGTSSAACRRAPTT 292
           CS+     + G  +  N  R  SS  C R P+T
Sbjct: 21  CSNSQSQRSSGSSISRNSNRSESSGYCGRRPST 53


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 390 CSHDVYVLTIGIKLMNNL*RGTSSAACRRAPTT 292
           CS+     + G  +  N  R  SS  C R P+T
Sbjct: 21  CSNSQSQRSSGSSISRNSNRSESSGYCGRRPST 53


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 234 PLKAAGCGPTSATSG 190
           PLK  G  PT AT+G
Sbjct: 392 PLKREGGPPTGATTG 406


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 472 QPPVCPPAAR 501
           Q P+CPPA R
Sbjct: 208 QSPLCPPAPR 217


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +2

Query: 410 TQNKLVEKFKSIF 448
           T+NKL+E+ K++F
Sbjct: 193 TKNKLIEESKTVF 205


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 182 DVPPLVALVGPHPAAFRGTSPRVDEQIDLIVK 277
           D PP  A   P P++    S ++D+  D+  K
Sbjct: 336 DTPPKPAPPPPPPSSSGPDSAKLDKIFDIATK 367


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = -3

Query: 569  INFNPVFLFEVPRAVNYREKRNERAAGGQTGGCR 468
            +NF  V    + ++++ + +  +  +GG  GGC+
Sbjct: 945  VNFRDV----IAKSISVKFQEGQTVSGGGMGGCQ 974


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,847
Number of Sequences: 438
Number of extensions: 1909
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)