Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18m08
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    27   0.20 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    25   0.82 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   1.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.4  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   5.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.7  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 357 EMRPCLCDSYRILSIWLSCTMVLYMLISVALSKF 256
           E+ P LCDS+  L I L CT  +  L ++++ ++
Sbjct: 105 ELGPMLCDSWVSLDI-LLCTASILSLCAISIDRY 137


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -2

Query: 501 WFTSSVTVIPRYKNTPTSLY*LKTK--SFGESAEALPMW 391
           W   +   +PRYK  P+SL  +  K  + G   +  P W
Sbjct: 76  WRGMTFVTVPRYKGVPSSLNVISEKIGNGGRLLQPYPDW 114


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 557 RNGPASVSLSPDPR 516
           R+GP SVSLS  PR
Sbjct: 127 RDGPPSVSLSSPPR 140


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 304 LYHGFVHVNQRSL 266
           +YHG V+V+QRSL
Sbjct: 88  IYHGEVNVHQRSL 100


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 515 SFRNTGSQVPSQSSLGIKTLLLL 447
           SF    S VP++ SLG+ TLL +
Sbjct: 262 SFWLDQSAVPARVSLGVTTLLTM 284



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 552 WTGICLPF 529
           WTG+CL F
Sbjct: 307 WTGVCLTF 314


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 515 SFRNTGSQVPSQSSLGIKTLLLL 447
           SF    S VP++ SLG+ TLL +
Sbjct: 262 SFWLDQSAVPARVSLGVTTLLTM 284



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 552 WTGICLPF 529
           WTG+CL F
Sbjct: 307 WTGVCLTF 314


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 341 RQGRISFYMTNYGEEGIHIGSASALSP 421
           ++GR+      YG  G+  G++SA +P
Sbjct: 53  KEGRLRAINPEYGFFGVAPGTSSATNP 79


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -2

Query: 537 LPFPGSSQFP*HWFTSSVTVIPRYKNTPTS 448
           +P P  +    HW  S V   P  + TP S
Sbjct: 373 IPEPSKNPAMGHWQMSCVACSPPPRQTPPS 402


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,847
Number of Sequences: 438
Number of extensions: 4553
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)