Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18m05
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 33 0.026
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 33 0.046
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 33 0.046
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 31 0.14
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 30 0.25
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 30 0.33
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 29 0.57
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 29 0.57
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 29 0.57
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 27 2.3
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 27 2.3
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 27 3.0
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 4.0
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 4.0
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 26 4.0
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 5.3
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 26 5.3
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.0
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 25 7.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 7.0
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 25 9.3
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 25 9.3
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 25 9.3
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 25 9.3
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 33.5 bits (73), Expect = 0.026
Identities = 23/88 (26%), Positives = 35/88 (39%)
Frame = +1
Query: 376 TKRKNDMTISENYAFTGVHHIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATP 555
+ + + I + + VH I HT + V + +R L AS D VSI +
Sbjct: 308 SSQDKSVRIYNSNTYNLVHVIDGFHTRSIRRVAWRPIERPVLAVASFDSVVSINEKIDDD 367
Query: 556 PRVSVILDGHTKAVTGCDWSASNELLVT 639
+ L+GH V WS + L T
Sbjct: 368 WECTAALEGHENEVKCIAWSCNGNYLAT 395
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 32.7 bits (71), Expect = 0.046
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 439 FDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATP-PRVSVILDGHTKAVTGCDWS 615
+ +HT+ V+ V+F + L SDD T+ I D P ++ H+KA+ +
Sbjct: 231 YHRHTDIVNDVQFHPQHEALLASVSDDCTLQIHDTRLNPEEEAPKVIQAHSKAINAVAIN 290
Query: 616 ASNELLV 636
N+ L+
Sbjct: 291 PFNDYLL 297
Score = 31.1 bits (67), Expect = 0.14
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +1
Query: 436 IFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWS 615
+ H++ ++ V + L AS D TV++ D+ R+ L+GH V G +WS
Sbjct: 276 VIQAHSKAINAVAINPFNDYLLATASADKTVALWDLRNPYQRLHT-LEGHEDEVYGLEWS 334
Query: 616 ASNE 627
+E
Sbjct: 335 PHDE 338
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 32.7 bits (71), Expect = 0.046
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 448 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSV-ILDGHTKAVTGCDWSASN 624
H +S VK+A + L ASDD T+ I D R SV L GHT V+ D++
Sbjct: 95 HYRGISQVKWATGSKY-LASASDDKTIRIWDFEK---RCSVRCLKGHTNYVSSIDFNPLG 150
Query: 625 ELLVT 639
LLV+
Sbjct: 151 TLLVS 155
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 31.1 bits (67), Expect = 0.14
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +1
Query: 469 VKFA-NNDRSKLCCAS--DDGT--VSICDVTATPPRVSVILDGHTKAVTGCDWSASNEL 630
VK A + D + L C D T V + D T +++ GHTK VT DWS+ +L
Sbjct: 393 VKLACSPDGATLACGGGVQDKTSGVVVFDTTRNCSSSAMLTGGHTKDVTAVDWSSEGQL 451
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 30.3 bits (65), Expect = 0.25
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +1
Query: 469 VKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVT 639
++F+ N L +G+V I D++ VS +L GHT+A+ WS+ + L+T
Sbjct: 30 IRFSTNGYH-LASGLVNGSVVIWDLSTFS--VSRVLTGHTRAIQSVCWSSCDRFLLT 83
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 29.9 bits (64), Expect = 0.33
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +1
Query: 448 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNE 627
H + V+ F+ + R + AS D +V + D + L GH AV C WS +
Sbjct: 388 HQKVVNHASFSPDGRC-IATASFDSSVRLWD--GKTGKFLATLRGHVAAVYQCAWSTDSR 444
Query: 628 LLVT 639
LLV+
Sbjct: 445 LLVS 448
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 29.1 bits (62), Expect = 0.57
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +1
Query: 442 DQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSAS 621
D H V V +F + SDD TV + D++ V L GH V W ++
Sbjct: 120 DAHQFPVHVTQFCPYANTTFLSGSDDKTVKVWDLST--GAVQYDLSGHEDYVRTASWMSA 177
Query: 622 NELL 633
L+
Sbjct: 178 TRLV 181
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 29.1 bits (62), Expect = 0.57
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 439 FDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTA 549
F+ HT V+ + F + D L +S+DGTV + D+ A
Sbjct: 79 FEGHTNNVTAIAF-HCDGKWLATSSEDGTVKVWDMRA 114
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +1
Query: 487 DRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVT 639
D L S D TV+I + L GH + V C +SA + LVT
Sbjct: 226 DVKHLATCSADATVNIWSTEDMSFMLERRLQGHQRWVWDCAFSADSTYLVT 276
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 29.1 bits (62), Expect = 0.57
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +1
Query: 448 HTEQVSVVKFANNDRSKLCCASDDGTVSICDV--TATP-PRVSVILDGHTKAVTG 603
H V+ VK+ +SKL DD VS+ D+ P P ++ + G T +TG
Sbjct: 314 HKGDVNAVKWMPGSKSKLATCGDDCVVSLWDLDQPVNPSPAPTLSVSGTTPGMTG 368
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 574 LDGHTKAVTGCDWSASNELLVT 639
L GHT V DWSA E L++
Sbjct: 41 LTGHTGCVNTLDWSADGEFLLS 62
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/77 (24%), Positives = 35/77 (45%)
Frame = +1
Query: 370 SPTKRKNDMTISENYAFTGVHHIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTA 549
S + ++++NY + F H+E ++ + F ++ L AS D TV + D+
Sbjct: 305 SKAPENTESSVNQNYIVGNLVKQFQAHSEYITSLDF-SHPFGTLATASTDKTVKVWDMAG 363
Query: 550 TPPRVSVILDGHTKAVT 600
S L GH+ V+
Sbjct: 364 VVYLGS--LKGHSDYVS 378
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1
Query: 448 HTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNE 627
HT ++ + + N + L AS D + I V P + + + H+ T +W + NE
Sbjct: 521 HTGRILGMSW-NAKSTHLATASLDTNIHIYSVER-PMKYIAMKNAHSLGATQVEWVSENE 578
Query: 628 LLVT 639
LL T
Sbjct: 579 LLST 582
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 562 VSVILDGHTKAVTGCDWSASN-ELLVT 639
+ +L GHT+AVT +W N ++L T
Sbjct: 314 IEFMLHGHTRAVTDMNWHRQNPDVLAT 340
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 206 LEKMPSLRILTQLRNT*MCGVSYCSVVTESKTTSQSVLHLLDKDPAVK-STYLLKSLLQK 382
L + + + L+N V+Y ++ K + +H L K ++ + + LQK
Sbjct: 520 LRQYGEIESIKYLKNRSSGFVAYTNISNAMKAVNGLPIHPLFKKSKIRYAPDRCEQELQK 579
Query: 383 GRMT*QYQRTMPLQEYIT 436
+ Q+ +PLQ++IT
Sbjct: 580 SKSNSPIQQNVPLQQFIT 597
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 505 CASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVT 639
CAS DGTV++ D + R S+ H +AV C + + L+T
Sbjct: 302 CASVDGTVALYDSASLKFRKSL---PHEQAVIDCKFLPNTPYLLT 343
Score = 25.4 bits (53), Expect = 7.0
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Frame = +1
Query: 364 EESPTKRKNDMTISENYAFTGVHHIFDQHTEQVSVVKFANNDRSKLCCASD-DGTVSICD 540
E+ + +ND T++ V F+ H + V V N S LC + D I D
Sbjct: 34 EDEAEQEQND-TMNNMVMDMSVQGFFE-HKDSVFSVSI-NPVHSNLCASGGGDDLGYIWD 90
Query: 541 VTATPPRVSVILDGHTKAVTGCDWSASNELLVT 639
+T T ++ L GH ++ DWS + T
Sbjct: 91 IT-TGEQICQ-LTGHKDSIVAIDWSFDGTYIAT 121
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +1
Query: 448 HTEQVSVVKFANNDRSKL-CCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWS 615
H V+ V +A ++ L CAS DG VS+ + + I H WS
Sbjct: 98 HQASVNAVSWAPHEYGALLACASSDGKVSVLEFKDDGSCDTRIFTAHEPGCNAVCWS 154
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +1
Query: 436 IFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWS 615
I H ++ +K+ N+D L + D +++ + R+ +GHT A+ CD +
Sbjct: 5 ILQGHERPLTQIKY-NHDGDLLFSCAKDKVINVW-FSHNGERLGTY-EGHTGAIWTCDIN 61
Query: 616 ASNELLVT 639
S+ L+V+
Sbjct: 62 KSSTLMVS 69
>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 507 ATQLRAVVVRELHDTHLFCVLVKYV 433
AT R+ ++ HDT +F + VKY+
Sbjct: 67 ATTRRSALLSGKHDTMIFTLFVKYI 91
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 26 VYVLLXXXXXXXWYSCKTFYEIWRLHFSSRSSL*MPDLMLTEHQTILTLKSCTYA 190
VY + +Y C T + + FS+ S + + +L TI TL +C YA
Sbjct: 204 VYKIFMSLIKSDYYFCLTATVQYAIFFSTISRVGLALTILVFPCTIATLMTCRYA 258
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -1
Query: 638 VTSSSLDADQSHPVTALVCPSRMTLTRGGVAV-TSHMDTVPSSEAQHSFERSLFANFTTL 462
++SSS P T+ + S ++ G ++ +S + T+P S + ++ S+ + +TL
Sbjct: 618 ISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTL 677
Query: 461 TCS 453
S
Sbjct: 678 VSS 680
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 614 DQSHPVTALVCPSRMTLTRGGVAVTSHMDTVPSSEAQH 501
D P+ V PSR TLT G + + + T S A H
Sbjct: 296 DSKSPIPFSVPPSRATLTGGYASGSIGLSTPGLSRAPH 333
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 499 LCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLV 636
+ A ++ +CD+ + S L GHT V DW NE ++
Sbjct: 162 IATAYRSSSIRLCDMQSGSYTHS--LSGHTGNVLAVDWCPKNEFVL 205
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +1
Query: 469 VKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNEL 630
+KF+++ R LC S+D T+ + + ++P ++ GH+ V C + + E+
Sbjct: 200 LKFSSDGRY-LCSVSEDRTLRLWSIESSPFLIATGF-GHSARVWRCVFLPNKEI 251
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +2
Query: 170 LKSCTYADEVNFLEKMPSLRILTQLRNT*MCGVSYCSVVTESKTTSQSVLHLLDKD 337
L C + N ++ PS + L+N + ++ + E +++ + V HLLD D
Sbjct: 897 LDKCISLESSNDIDDRPSSTSPSTLKNPSINSINRQTHDVEKESSDRDVPHLLDPD 952
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,195
Number of Sequences: 5004
Number of extensions: 44808
Number of successful extensions: 164
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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