Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18m01
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1111 + 10279778-10280065,10280265-10280340,10280734-102819... 32 0.41
08_02_0707 - 20212190-20214592 30 1.7
04_04_0483 - 25554531-25554605,25554681-25555644,25555722-255558... 29 2.2
12_02_0389 - 18499372-18499606,18499713-18499882 29 3.8
05_06_0003 + 24797098-24797223,24797981-24798193,24798289-247984... 28 5.1
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005... 28 5.1
01_01_0429 + 3254291-3254435,3254902-3255210,3255286-3256747,325... 28 5.1
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 28 6.7
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 27 8.9
05_05_0009 + 21485254-21485426,21485512-21485734 27 8.9
03_05_0105 - 20861130-20861384,20861472-20862262,20862364-208626... 27 8.9
02_03_0346 + 17981337-17981720,17981811-17982185 27 8.9
>07_01_1111 +
10279778-10280065,10280265-10280340,10280734-10281944,
10283779-10284138
Length = 644
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -2
Query: 383 EHWHIGDLSCLLQQFNVFVHLRQEMHERCSEKYSATKRQQSHHQLIRRPQVW 228
EHW+ S L +F E+++ C KY K ++ H+L ++ VW
Sbjct: 564 EHWNQAVKSLSLNVQKLFSDRDPELYKECLRKYEENKAKEKDHKL-KQESVW 614
>08_02_0707 - 20212190-20214592
Length = 800
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 422 HHEESSAHYQTGKEHWHIGDLSCLLQQFNVFVHLRQEMHERCSEKYSATKRQQS 261
HH + S H+Q +H H D+S + + +H CSE +S QS
Sbjct: 589 HHHDHSEHHQQSGDHAH-QDISNISSDPAILEIPLNSIHTHCSEAHSCNGGLQS 641
>04_04_0483 -
25554531-25554605,25554681-25555644,25555722-25555847,
25556162-25556331,25556431-25556526
Length = 476
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +2
Query: 164 VRGMFAVVDIEEVQLVHEIPRSKPAVFESAGDGTVGVWWRSTFRYNVHAS 313
V G V D+++ RS E A GTVG +W ST + N H S
Sbjct: 384 VLGALTVDDLKQSSATSSPRRSPSHNREEAILGTVGSYWSSTKQDNAHCS 433
>12_02_0389 - 18499372-18499606,18499713-18499882
Length = 134
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 516 SISGNDPEINQETKQIENETNSGHSHLVL 602
+I+ DP I ++T+ ++NE +S HL+L
Sbjct: 8 NITAMDPPIAEQTRSLDNEPSSDPHHLLL 36
>05_06_0003 +
24797098-24797223,24797981-24798193,24798289-24798444,
24798555-24798959
Length = 299
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 371 CASVPCRFDNVRRILHDVLSRRIS 442
C R D R++LHDV+ RRIS
Sbjct: 204 CLIKQSRHDEARQVLHDVVLRRIS 227
>03_06_0065 -
31399791-31399874,31399956-31400165,31400407-31400526,
31401166-31401225,31401670-31401879,31402512-31402587,
31403010-31403173,31403254-31403316,31403640-31403727,
31403810-31404460,31405102-31405149,31405334-31405902
Length = 780
Score = 28.3 bits (60), Expect = 5.1
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Frame = -3
Query: 427 KYIMKNPPHIIKPARNTGTSGIS----PVSCNNSMFSSTSGRRC---MNVVAKSTPPPNA 269
K + KNP H R+ GT+GI+ + + +S +N+ AKS P
Sbjct: 210 KTVQKNPEH--GDLRSNGTNGINCGQRRKAFKEKLQDKSSAETLTFRLNIPAKSAPSSGF 267
Query: 268 NSPITS*FEDRRFGSRDFVN 209
+SP+ S RR S DF++
Sbjct: 268 SSPVQS---PRRLSSVDFLS 284
>01_01_0429 +
3254291-3254435,3254902-3255210,3255286-3256747,
3256950-3257577
Length = 847
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 394 KPARNTGTSGISPV--SCNNSMFSSTSGRRCMNVVAKSTPPPNANSP 260
K TG P+ CN + S+TSG ++ ++ S+PPP+++ P
Sbjct: 681 KQTDRTGHPSSDPLIADCNICLKSATSGT--LDTISPSSPPPSSSPP 725
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 265 CWRLVAEYFSLQRSCISC-LRWTKTL 339
CWRLV + L R SC LRWT L
Sbjct: 1723 CWRLVPKLAGLLRCGKSCRLRWTNYL 1748
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 461 QGAQTIREERRQTVQPKEEHLGERSRNKPRDQT 559
Q +Q+ +E QTV P+ HLG + +P Q+
Sbjct: 89 QVSQSQQERPGQTVYPQASHLGHQQLQQPTQQS 121
>05_05_0009 + 21485254-21485426,21485512-21485734
Length = 131
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 268 WRLVAEYFSLQRSCISCLRWTK 333
WR VAE F +R C LRW K
Sbjct: 57 WRAVAEVFWSRRRCPFGLRWPK 78
>03_05_0105 -
20861130-20861384,20861472-20862262,20862364-20862618,
20862713-20862827,20862959-20863011,20863113-20863373,
20863699-20863749,20863863-20864114,20864504-20864726,
20865317-20865460
Length = 799
Score = 27.5 bits (58), Expect = 8.9
Identities = 23/75 (30%), Positives = 36/75 (48%)
Frame = +3
Query: 366 PDVPVFLAGLIMCGGFFMMYLVEELVHLYIHAREHKPSEKNDAKPFSLRKSISGNDPEIN 545
PD V + LI+ FM++ V ++V + +HA +H D F+L IS +
Sbjct: 88 PDDVVGVLSLIVYS--FMLFTVIKIVFVALHANDH-----GDGGTFALYSLISRHAKVSL 140
Query: 546 QETKQIENETNSGHS 590
Q E+E SG+S
Sbjct: 141 IPNHQAEDELISGYS 155
>02_03_0346 + 17981337-17981720,17981811-17982185
Length = 252
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 57 WDSVPNASRSLFVQRLTR 4
WD +P A+R LF +RLTR
Sbjct: 41 WDFLPAAARWLFARRLTR 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,113,823
Number of Sequences: 37544
Number of extensions: 384389
Number of successful extensions: 1268
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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