Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18m01
(612 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80447-10|AAB37814.1| 477|Caenorhabditis elegans Hypothetical p... 47 9e-06
Z70306-4|CAH04694.1| 363|Caenorhabditis elegans Hypothetical pr... 33 0.12
Z67880-2|CAA91792.2| 505|Caenorhabditis elegans Hypothetical pr... 33 0.16
U42437-4|AAA83498.2| 349|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z70306-5|CAO82011.1| 337|Caenorhabditis elegans Hypothetical pr... 32 0.28
U67949-1|AAL06028.2| 633|Caenorhabditis elegans Hypothetical pr... 31 0.65
Z81058-2|CAB62799.1| 103|Caenorhabditis elegans Hypothetical pr... 31 0.86
AL032648-3|CAA21695.1| 319|Caenorhabditis elegans Hypothetical ... 30 1.1
U97009-2|AAC69029.3| 342|Caenorhabditis elegans Serpentine rece... 29 2.0
Z74027-4|CAA98423.1| 561|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z74027-3|CAA98422.1| 557|Caenorhabditis elegans Hypothetical pr... 29 3.5
U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical p... 29 3.5
U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical p... 29 3.5
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z95559-8|CAB54437.1| 720|Caenorhabditis elegans Hypothetical pr... 27 8.0
U97189-2|AAC48165.2| 336|Caenorhabditis elegans Serpentine rece... 27 8.0
>U80447-10|AAB37814.1| 477|Caenorhabditis elegans Hypothetical
protein F55F8.9 protein.
Length = 477
Score = 47.2 bits (107), Expect = 9e-06
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Frame = +3
Query: 111 NVLTAKIVTMVSLFGISMFVGCLPLLISKKFNW--FTKSRDPNLRSSNQXXXXXXXXXXX 284
N K+V M +F +++ VG PL + K T + +
Sbjct: 2 NEAILKLVLMFVMFSLTVIVGLSPLKVLHKLRHEAATAQSSSKHKHVSLVLCLLTCFSGG 61
Query: 285 XXXXTTFMHLLPEVDENIELLQETGEIP-DVPVFLAGLIMCGGFFMMYLVEELVHLYIHA 461
T F+HL PE+ EN+E L D PV L+ C GFF+++ +EE+V + I +
Sbjct: 62 VFLATCFLHLFPELRENLETLDTVHNFRIDYPV--GELLSCLGFFLIFFLEEVVIMIIPS 119
Query: 462 REH 470
H
Sbjct: 120 FAH 122
>Z70306-4|CAH04694.1| 363|Caenorhabditis elegans Hypothetical
protein C06G8.3b protein.
Length = 363
Score = 33.5 bits (73), Expect = 0.12
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Frame = +3
Query: 297 TTFMHLLPEVDENIELLQETGEIPDVPVFLAGLIMCGGFFMMYLVEELVHLYI----HAR 464
T F+ ++P V + + ET + + + + L +C GFF +YL+EE+ H
Sbjct: 62 TCFLDVMPHVQQTYGEILETYNV-EFRLPMNQLFICVGFFFVYLIEEITAKVFGSGGHGH 120
Query: 465 EHKPS---EKNDAKPFSLRKSISGNDPEINQETKQIENETNSGHSHLVLDSS 611
H P + K R + N + ET I ++ + HS +V +++
Sbjct: 121 SHGPPIPLTVDIKKEKVTRVQLIENGSSSSPETLMIPIDSRTRHSLVVEETA 172
>Z67880-2|CAA91792.2| 505|Caenorhabditis elegans Hypothetical
protein C34E7.1 protein.
Length = 505
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -3
Query: 289 STPPP----NANSPITS*FEDRRFGSRDFVNQLNFFDINNGKHPTNMD 158
+TP P N N+PI+S S DF N+L FFD+ + + P + D
Sbjct: 419 NTPQPQVQINQNTPISSVASTSSASSLDFPNELGFFDMQDPELPVSCD 466
>U42437-4|AAA83498.2| 349|Caenorhabditis elegans Hypothetical
protein F30B5.7 protein.
Length = 349
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 297 TTFMHLLPEVDENIELLQETGEIPDVPVFLAGLIMCGGFFMMYLVEE 437
T F+ ++P ++E E L ET ++ + + C GFF +Y +EE
Sbjct: 59 TCFLDIIPHINEGYEELMETYDL-NWHFAYPQFVTCCGFFFIYFIEE 104
>Z70306-5|CAO82011.1| 337|Caenorhabditis elegans Hypothetical
protein C06G8.3c protein.
Length = 337
Score = 32.3 bits (70), Expect = 0.28
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +3
Query: 297 TTFMHLLPEVDENIELLQETGEIPDVPVFLAGLIMCGGFFMMYLVEEL 440
T F+ ++P V + + ET + + + + L +C GFF +YL+EE+
Sbjct: 62 TCFLDVMPHVQQTYGEILETYNV-EFRLPMNQLFICVGFFFVYLIEEI 108
>U67949-1|AAL06028.2| 633|Caenorhabditis elegans Hypothetical
protein F55A4.10 protein.
Length = 633
Score = 31.1 bits (67), Expect = 0.65
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -3
Query: 388 ARNTGTSGISPVSCNNSMFSSTSGRR--CMNVVAKSTPPPNANSPITS*FED 239
ARN I S + + TSGRR + + K TP PNAN P+ S E+
Sbjct: 387 ARNFPDLSIVIKSDSTNENDKTSGRRRPSVKISKKKTPAPNANLPLKSNLEE 438
>Z81058-2|CAB62799.1| 103|Caenorhabditis elegans Hypothetical
protein F11E6.2 protein.
Length = 103
Score = 30.7 bits (66), Expect = 0.86
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +3
Query: 66 YEIVKERQKKTMAVENVLTAKIVTMVSLFGISMFVGCLPLLISKKFNWFTKSRDPNLRSS 245
Y+I+K+ KKT + + TM ++F ++ +GC+ + +F FT R ++R S
Sbjct: 35 YDIIKKASKKTDDPVIIRRTSMDTMQNVFPLARSMGCICTDRNFQFPDFTNHRYCSVRVS 94
Query: 246 N 248
N
Sbjct: 95 N 95
>AL032648-3|CAA21695.1| 319|Caenorhabditis elegans Hypothetical
protein Y54G9A.4 protein.
Length = 319
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 303 FMHLLPEVDENIELLQ-ETGEIPDVPVFLAGLIMCGGFFMMYLVEELVHLYIHAREHKPS 479
F+ +LP+ E E +Q +T D P LI GFF +YL EEL + + H S
Sbjct: 63 FLDMLPDCLEAWESVQTDTNYTSDYP--FVQLIALLGFFFVYLTEELSSVICNV-GHGHS 119
Query: 480 EKND 491
ND
Sbjct: 120 HSND 123
>U97009-2|AAC69029.3| 342|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 33 protein.
Length = 342
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 587 MTAIGFILNLFGLLVYFWIVPRDALP 510
+T+IGF+LNL L + W PR+ P
Sbjct: 34 LTSIGFLLNLLLLYLIIWKSPRNLTP 59
>Z74027-4|CAA98423.1| 561|Caenorhabditis elegans Hypothetical
protein C13G3.3b protein.
Length = 561
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/45 (20%), Positives = 22/45 (48%)
Frame = -2
Query: 398 YQTGKEHWHIGDLSCLLQQFNVFVHLRQEMHERCSEKYSATKRQQ 264
++ K HW+ + +F+ + Q++ + CS+ Y + Q+
Sbjct: 400 FKNSKSHWNKTIHGLIYNALKMFMEMNQKLFDECSQAYQKDRVQE 444
>Z74027-3|CAA98422.1| 557|Caenorhabditis elegans Hypothetical
protein C13G3.3a protein.
Length = 557
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/45 (20%), Positives = 22/45 (48%)
Frame = -2
Query: 398 YQTGKEHWHIGDLSCLLQQFNVFVHLRQEMHERCSEKYSATKRQQ 264
++ K HW+ + +F+ + Q++ + CS+ Y + Q+
Sbjct: 396 FKNSKSHWNKTIHGLIYNALKMFMEMNQKLFDECSQAYQKDRVQE 440
>U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical
protein F46F11.1b protein.
Length = 1225
Score = 28.7 bits (61), Expect = 3.5
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -3
Query: 484 FSDGLCSLACMYK*TNSSTKYIMKNPPHIIKPARNTGTSGISPVSCNNSMFSSTSGRR-- 311
FS GL K T++ + P KPA ++ +SG N+S SST GRR
Sbjct: 913 FSPGLYPCFLTEKERIYETRFNLSTNP---KPATSSRSSGRESRDTNDSASSSTEGRRPS 969
Query: 310 CMNVVAKSTPPPNANSPITS 251
VV TP + +T+
Sbjct: 970 IEKVVTVVTPTQLSTPSVTN 989
>U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical
protein F46F11.1a protein.
Length = 1339
Score = 28.7 bits (61), Expect = 3.5
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -3
Query: 484 FSDGLCSLACMYK*TNSSTKYIMKNPPHIIKPARNTGTSGISPVSCNNSMFSSTSGRR-- 311
FS GL K T++ + P KPA ++ +SG N+S SST GRR
Sbjct: 913 FSPGLYPCFLTEKERIYETRFNLSTNP---KPATSSRSSGRESRDTNDSASSSTEGRRPS 969
Query: 310 CMNVVAKSTPPPNANSPITS 251
VV TP + +T+
Sbjct: 970 IEKVVTVVTPTQLSTPSVTN 989
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = -3
Query: 364 ISPVSCNNSMFSSTSGRRCMNVVAKSTPPPNANSPITS*FED 239
I V N F T CM ++ PP +P+T+ F +
Sbjct: 272 IDGVDANGFNFRRTGRFSCMQLLTSPAPPTTTQAPVTTCFNN 313
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = -3
Query: 364 ISPVSCNNSMFSSTSGRRCMNVVAKSTPPPNANSPITS*FED 239
I V N F T CM ++ PP +P+T+ F +
Sbjct: 272 IDGVDANGFNFRRTGRFSCMQLLTSPAPPTTTQAPVTTCFNN 313
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = -3
Query: 364 ISPVSCNNSMFSSTSGRRCMNVVAKSTPPPNANSPITS*FED 239
I V N F T CM ++ PP +P+T+ F +
Sbjct: 272 IDGVDANGFNFRRTGRFSCMQLLTSPAPPTTTQAPVTTCFNN 313
>Z95559-8|CAB54437.1| 720|Caenorhabditis elegans Hypothetical
protein Y41E3.16 protein.
Length = 720
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 434 RISSLVHTRQGAQTIREERRQTVQPKEEHLGERSRNKPR 550
++ S+ + +GAQ ++EE + + +EE E R P+
Sbjct: 86 KVDSIRRSTRGAQQVKEEEPEEEEEEEEEQDEPVRETPK 124
>U97189-2|AAC48165.2| 336|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 15 protein.
Length = 336
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 178 KHPTNMDIPNKDTIVTILAVKTFSTAIVFFCLSLTI 71
KHP N+ IP++ + V F + FF +S+TI
Sbjct: 88 KHPCNLLIPDQYLKIGNTTVSIFMSLSTFFPISITI 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,753,549
Number of Sequences: 27780
Number of extensions: 338305
Number of successful extensions: 1375
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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