Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18l17
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    26   0.29 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.7  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   4.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.3  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   6.3  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   6.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   6.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.3  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 419 CPMILPLCRCLYPQ---LWVLDQLLGSMWGSLTIQLLD 523
           CP+IL  C+C+Y Q   L +  +L G +   + +   D
Sbjct: 176 CPLILGSCKCIYVQSINLCMAGRLFGYLCPGMALSQFD 213


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 535 PQYHPMAGFPSGVHNQLNKTSELSPQQSVELASQAQPVTGS 657
           P   P  GFP  VH         S +Q V+L  + + V+G+
Sbjct: 231 PLLCPAQGFPVPVHRWYKFIEGSSRRQPVQLNERVRQVSGT 271


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +1

Query: 412 PSMPNDPAIMQMSVPPTLGTGPAPG 486
           PS    P   Q   PP    GP PG
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPG 49


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -3

Query: 110 KNYPPNKSEQTT 75
           K YPP+++EQ+T
Sbjct: 340 KKYPPSETEQST 351


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -3

Query: 110 KNYPPNKSEQTT 75
           K YPP+++EQ+T
Sbjct: 340 KKYPPSETEQST 351


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 446 CLYPQLW--VLDQLLGSMWGSLTIQLLDKLHI 535
           C   + W  ++  ++G+     T+ LLDK+HI
Sbjct: 303 CFLFRAWESIIVGMIGAFITCFTMPLLDKMHI 334


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 231 LRRPTFYCRSSGMYY 275
           + +PTF C+  G +Y
Sbjct: 227 IEQPTFLCKGDGKWY 241


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 577  NQLNKTSELSPQQSVELASQAQPVTGSN 660
            NQLN+  +   Q   ++ SQAQ  +G +
Sbjct: 1148 NQLNRQGKQVIQTQYQVVSQAQTSSGQS 1175


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +1

Query: 403 NNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAG 558
           N  PS PN P          L +    GQ     N  V    PYP  HP++G
Sbjct: 62  NFSPSGPNSPGSFTAGCHSNLLSTSPSGQ-----NKAVA---PYPPNHPLSG 105


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 391 IRVLNNVPSMPNDPAIMQMSV 453
           I  LNNV    +DP +M+ S+
Sbjct: 90  ITALNNVIDFLHDPGLMEASL 110


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 391 IRVLNNVPSMPNDPAIMQMSV 453
           I  LNNV    +DP +M+ S+
Sbjct: 90  ITALNNVIDFLHDPGLMEASL 110


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +1

Query: 403 NNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAG 558
           N  PS PN P          L +    GQ     N  V    PYP  HP++G
Sbjct: 62  NFSPSGPNSPGSFTAGCHSNLLSTSPSGQ-----NKAVA---PYPPNHPLSG 105


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 487 QYVGQFNHPVVGQTPYPQYHP 549
           QY G     +VG++ +  YHP
Sbjct: 329 QYFGYLPQDMVGRSLFDFYHP 349


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 487 QYVGQFNHPVVGQTPYPQYHP 549
           QY G     +VG++ +  YHP
Sbjct: 35  QYFGYLPQDMVGRSLFDFYHP 55


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 583 AGCELHLESQPLD 545
           AGC ++LE+ P+D
Sbjct: 128 AGCPMNLENFPMD 140



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 114 TEKLSTE*IRTNNKMTDGKLAT 49
           T  L  E I  +NK T G LAT
Sbjct: 328 TRPLKKEPITQSNKRTAGNLAT 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,455
Number of Sequences: 438
Number of extensions: 4733
Number of successful extensions: 18
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)