Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18k19
         (317 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   0.89 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   0.89 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   6.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   6.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   6.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   8.3  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 0.89
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 252 IAVGYNIVFE*--TIFLQSKSMLSLINSIHKNVDE 154
           I   +N +FE     FL+ +  L +IN+I KN+ +
Sbjct: 387 ILYDFNDIFEKDQASFLERERFLGIINNIFKNMSQ 421


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 0.89
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 252 IAVGYNIVFE*--TIFLQSKSMLSLINSIHKNVDE 154
           I   +N +FE     FL+ +  L +IN+I KN+ +
Sbjct: 387 ILYDFNDIFEKDQASFLERERFLGIINNIFKNMSQ 421


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 39  SHLKNAKLLTLVTVYNNST 95
           +HLKNAK L ++   + +T
Sbjct: 364 NHLKNAKYLDVIERNSGAT 382


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 39  SHLKNAKLLTLVTVYNNST 95
           +HLKNAK L ++   + +T
Sbjct: 364 NHLKNAKYLDVIERNSGAT 382


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 39  SHLKNAKLLTLVTVYNNST 95
           +HLKNAK L ++   + +T
Sbjct: 364 NHLKNAKYLDVIERNSGAT 382


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 86  QFYSRTSTNVRSVFASLD*VSLFSSTFL*IELIKL 190
           + Y     NV  ++A +   +  SST+   EL+K+
Sbjct: 263 KIYMSRHENVSILYADIVGFTAISSTYSASELVKI 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,164
Number of Sequences: 438
Number of extensions: 1397
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)