Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18k16
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   5.3  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    25   7.0  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   7.0  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   7.0  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    25   7.0  

>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +3

Query: 60  VLSCAFVVLCSVINCSYSD*RSKIKLKFYCLMMSGSDSHKSETTKDNIS 206
           +LS  F V+  V N +      K++++F  L + G D   ++++ DNI+
Sbjct: 415 LLSDRFPVVMPVANTAAIP--EKVQVRFGSLTLGGEDKKSTKSSSDNIA 461


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +3

Query: 357 DVFLIADGCRIPAHKVLLASCSEYFAAMFTGSLREAQLTEITLERIDSQALQALVHYCYT 536
           D+       R+ AHK  LA+ S YF + F+  L  ++  EI ++   ++  ++++ Y Y 
Sbjct: 168 DIVFAGQYGRVFAHKFYLAARSSYFKSKFS-KLGPSE-HEIEVKHF-AKEFESILRYLYL 224

Query: 537 GT-IELREETVEVLLSTASLLQLH 605
            T     ++    LLS     QL+
Sbjct: 225 DTNAVFTKQYNNALLSIGKKFQLN 248


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 474 EITLERIDSQALQALVHYCY 533
           E+  + + S A QAL H+CY
Sbjct: 521 EVANKEVQSAAAQALKHFCY 540


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1026

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 20/73 (27%), Positives = 37/73 (50%)
 Frame = +3

Query: 402  VLLASCSEYFAAMFTGSLREAQLTEITLERIDSQALQALVHYCYTGTIELREETVEVLLS 581
            +L   C E +  M   +LR   L  ++L   ++Q+  +L +   T      E+ + +L S
Sbjct: 831  LLTCLCDEVYEQM-KSNLRSVILKVVSLAIENTQSEFSLFNQLIT------EKLLPILYS 883

Query: 582  TASLLQLHSVTNA 620
            + S+ ++H VTNA
Sbjct: 884  SRSVEEVHDVTNA 896


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/37 (27%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +2

Query: 335 LSITEIVRR---IFNRRWMQDTSTQSIIGIMQ*VLCS 436
           + I+ + RR   IF  +W++D+S++ ++ ++  + CS
Sbjct: 500 IGISRVYRRRIAIFLSQWIEDSSSEQLLEVIYKLYCS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,475
Number of Sequences: 5004
Number of extensions: 38067
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)