Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18k16
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      50   1e-08
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          44   1e-06
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 50.4 bits (115), Expect = 1e-08
 Identities = 26/86 (30%), Positives = 46/86 (53%)
 Frame = +3

Query: 357 DVFLIADGCRIPAHKVLLASCSEYFAAMFTGSLREAQLTEITLERIDSQALQALVHYCYT 536
           DV L  DG  + AH+V+L++CS YF  +   +    +   I L+ +    L ALV + Y 
Sbjct: 33  DVTLACDGRSLKAHRVVLSACSPYFRELLKST--PCKHPVIVLQDVAFSDLHALVEFIYH 90

Query: 537 GTIELREETVEVLLSTASLLQLHSVT 614
           G + + + ++   L TA +L++  +T
Sbjct: 91  GEVNVHQRSLSSFLKTAEVLRVSGLT 116


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 24/88 (27%), Positives = 47/88 (53%)
 Frame = +3

Query: 339 QSQKLCDVFLIADGCRIPAHKVLLASCSEYFAAMFTGSLREAQLTEITLERIDSQALQAL 518
           Q++   DV L  +   + AHKV+L++CS YF  +   +  +   T I  + +    L+ +
Sbjct: 31  QTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCK-HPTIIMPQDVCFNDLKFI 89

Query: 519 VHYCYTGTIELREETVEVLLSTASLLQL 602
           + + Y G I++ +  ++ LL TA  L++
Sbjct: 90  IEFVYRGEIDVSQAELQSLLKTADQLKI 117


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -1

Query: 438 WLQSTHCMMPIILCVLVSCIHLRLKIRRTISVIDSIRKYFLRLLQRVPYHKRTHLD*MNW 259
           +L  T  M  + + V V  I+   +  RT  +   IRK FL+ L  +   +R     + W
Sbjct: 299 YLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPQLIRKIFLKYLPTILMMRRPKKTRLRW 358


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 449 TRKHGCKVLTA*CQ*YFVCWYP 384
           +RK   K+L+A    +F+CW P
Sbjct: 264 SRKSVIKMLSAVVILFFICWAP 285


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = +1

Query: 163 DPILISQKLRKTIYPQIPLMKDYLENLVN*VFPVHLVKMSS 285
           +P+  +  +   I+P +PL+++ L+ L   ++P+   K+ S
Sbjct: 531 NPLTDTVPIHTWIHPWLPLLRNRLDTL---IYPIIRRKLGS 568


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,925
Number of Sequences: 438
Number of extensions: 2478
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)