Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18k14
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...   129   2e-31
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    40   2e-04
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    38   0.001
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.5  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   2.6  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    26   3.4  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    26   4.5  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   6.0  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    25   6.0  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    25   6.0  
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc...    25   7.9  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   7.9  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score =  129 bits (312), Expect = 2e-31
 Identities = 64/82 (78%), Positives = 72/82 (87%), Gaps = 1/82 (1%)
 Frame = +1

Query: 331 DNLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIP 507
           D+LP ILNALEV+   + RLVLEVAQH+GENTVRTIAMDGTEGLVRG  V+D+GSPI IP
Sbjct: 73  DSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGSPISIP 132

Query: 508 VGAETLGRIINVIGEPIDERGP 573
           VG  TLGRI+NVIGEP+DERGP
Sbjct: 133 VGPGTLGRIMNVIGEPVDERGP 154


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
 Frame = +1

Query: 397 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 573
           +A +L  +TV  +   G + LVR G+ V  +   + +PVG   LGR+++ +G PID +GP
Sbjct: 90  MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +1

Query: 388 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 564
           VLEVA H     V     +GT G+ VR   +  +G  +RIPV  + LGR+ N  G PID 
Sbjct: 63  VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPID- 117

Query: 565 RGP 573
           +GP
Sbjct: 118 KGP 120


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 572 GPRSSIGSPITLMMRPRVSA-PTGIRMGEPESSTGCPRTKPSVPSM 438
           G R++ G+P  +    R+++ PT I    PES       K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 123 LVERQQSRIELVTKITNSLRNDPSSAD 43
           LVER  SR+E+V +  +SL N  + AD
Sbjct: 889 LVERANSRVEVVHERLSSLENQVTIAD 915


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 358 GHLGSAASCLQTEHPLRHQ*RQLP 287
           G  GSA SCL   H L H  +Q P
Sbjct: 140 GFAGSAISCLVWAHQLLHPNKQFP 163


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 448 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 564
           T GL  G PV  +G P+ + +G      I + I  P+ +
Sbjct: 77  TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 512 PTGIRMGEPESSTGCPRTKPSVPSMAMV 429
           P G  +G PES+      KPS PS + +
Sbjct: 795 PLGHALGNPESNNSSNSFKPSHPSQSFL 822


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 239 TAAPVTSDAFSVALFTTVFVAKRPTLQT 156
           T + VTS+A S A    V  +K+P L+T
Sbjct: 521 TESAVTSEALSAARLEAVKASKKPPLRT 548


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 4   FFPPRTSYRSHPPIGTGRIV 63
           F PPR   R  PPI TG +V
Sbjct: 198 FIPPRILKRLFPPIVTGPVV 217


>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 373 RSPRLVLEVAQHLGENTVRTIAMD 444
           R+P LVL+ A  LGEN    +  D
Sbjct: 362 RNPSLVLDSANQLGENVAWPVQYD 385


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +2

Query: 53  DGSLRKEFVIFVTSS-ILLCC 112
           DG+LR E V+ ++ S ILLCC
Sbjct: 631 DGTLRTEEVVELSESLILLCC 651


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,740
Number of Sequences: 5004
Number of extensions: 49078
Number of successful extensions: 135
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)