Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18k12
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    64   8e-13
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.62 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.62 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   4.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   4.4  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 64.5 bits (150), Expect = 8e-13
 Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 6/176 (3%)
 Frame = +2

Query: 113 KVVLITGASSGIGAETALDFAKLEANLVLTARNKENLEKISAECEHVSPNKLKPLVVVAD 292
           +V L+TGA+SGIG             ++  A   + ++ +  E +   P KL PL    D
Sbjct: 8   EVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKS-KPGKLVPLQ--CD 64

Query: 293 VTMESDIKNIIDKTINQFNKLDVLVNNAGILAAGSIENTSLDQYDSVMNTNVRGPYLLTM 472
           ++ ++DI  +I+        +D+L+NNA I    +++N  +  +  + + N+ G   +  
Sbjct: 65  LSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMIQ 124

Query: 473 LATPYLVK---TKGSIVNVSSVAGLRSFP---NILAYCISKAALDQFTRCVALELA 622
                + K     G IVN++  +GL   P   N  AY  SK AL   T C+  ELA
Sbjct: 125 EVLKLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSELA 180


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 323 IDKTINQFNKLDVLVNNA 376
           IDK    F+K D L+NNA
Sbjct: 458 IDKLYTYFDKCDTLINNA 475


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 323 IDKTINQFNKLDVLVNNA 376
           IDK    F+K D L+NNA
Sbjct: 458 IDKLYTYFDKCDTLINNA 475


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 266 LKPLVVVADVTMESDIKNIIDKTINQFNKL-DVLVNNAGIL 385
           L  LVV   V    D K + D  ++ +NKL   +VN + +L
Sbjct: 14  LSALVVHGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVL 54


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 266 LKPLVVVADVTMESDIKNIIDKTINQFNKL-DVLVNNAGIL 385
           L  LVV   V    D K + D  ++ +NKL   +VN + +L
Sbjct: 14  LSALVVHGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVL 54


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 323 IDKTINQFNKLDVLVNNAGIL 385
           +DK I  F + D  +NN  +L
Sbjct: 456 VDKLITYFEQFDTTINNGLLL 476


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 323 IDKTINQFNKLDVLVNNAGIL 385
           +DK I  F + D  +NN  +L
Sbjct: 456 VDKLITYFEQFDTTINNGLLL 476


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,113
Number of Sequences: 438
Number of extensions: 2911
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)