Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18k07
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        26   4.4  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    25   5.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.6  

>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 452 GSLPLLIGIIYIFNDLNTITIYFLKFFNMNMY 357
           G LP++I +      ++ + I+F+  FN N Y
Sbjct: 40  GILPIIITLFIFSFVISRMIIFFISLFNKNTY 71


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = -3

Query: 449 SLPLLIGIIY--IFNDLNTITIYFLKFFNMNMY---LLYISIIFAFLVKIPIYFVHL 294
           SL + IG+IY  ++       I F   ++  +    L+Y+ I+   L+ +  YFV L
Sbjct: 322 SLNIYIGLIYSILYLWFEAFPILFTSVYHFTIIENGLVYLGILVGALITLACYFVFL 378


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 488  QAGIYLLFYTLFGSLPLL 435
            Q  IYLLF TL  +LP+L
Sbjct: 1360 QEEIYLLFKTLLNNLPIL 1377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,386,290
Number of Sequences: 5004
Number of extensions: 20942
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)