Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18k03
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    27   0.85 
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   1.5  
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    26   2.6  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   4.5  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   4.5  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    25   6.0  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    24   7.9  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    24   7.9  
SPAC22G7.11c ||SPAC4G8.01c|conserved fungal protein|Schizosaccha...    24   7.9  

>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 280 FGKSNANDIYPVVLTSISSFTEWILQN 360
           FG S AN + PV L S  SFT +++++
Sbjct: 243 FGNSFANGLPPVFLNSSRSFTSYLVKS 269


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 262 AHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDH 155
           +H+  +  H S+Y R+R   PG N      QS   H
Sbjct: 202 SHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +1

Query: 214 DYDNTDLGAPAFFQNALVGIVSFGKSNANDIYPVVLTSISSFTEWILQN 360
           D  + +L       + +   +SF K    D YP  +  +  FT+ ++QN
Sbjct: 102 DLTDVELSDKVIKASYIEDTISFSKPKTVDNYPEYIQHLPGFTKKVVQN 150


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 256 NALVGI-VSFGKSNANDIYPVVLTSISSFTEWILQ 357
           NAL  + V FGK+ +ND+    L +  + T+W+L+
Sbjct: 614 NALAPLCVFFGKAKSNDLILSHLITYLNDTDWMLR 648


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 325 W*VLRGRCHWHCS 287
           W V+ GRC W CS
Sbjct: 406 WEVMTGRCVWKCS 418


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -2

Query: 171 SHDAIMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYYD 13
           S+D I  L+     F   H+E   +    +Y   L      E+  +N  GYYD
Sbjct: 568 SYDEIRPLISILPEFAALHSEEHRMAAFDKYIRRLREKRELEKQYQNRRGYYD 620


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -2

Query: 186  AEFVISHDAIMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSE 46
            AE++IS    +   +  A+  +GH + +L  + + +T A  G +P +
Sbjct: 1392 AEYLISETHRLINDILDALEVIGHEQTDLNHIFINFTPAF-GLAPKQ 1437


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 89  PSDTLPP*TVVPHPSRSTKIPWGITTP 9
           PSD     T VP  + S   PW  TTP
Sbjct: 21  PSDAQSSPTFVPSANPSLTTPWLQTTP 47


>SPAC22G7.11c ||SPAC4G8.01c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +1

Query: 94  LHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLG 237
           LH   +    KE   +  + H        + A   +AGGRD D  DLG
Sbjct: 15  LHNPNVSQQAKERAEDYIESHSSGQETGDYSA---QAGGRDLDYEDLG 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,689,242
Number of Sequences: 5004
Number of extensions: 34260
Number of successful extensions: 106
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)