Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18j07
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M...    29   0.77 
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    27   2.4  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   4.1  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    25   7.2  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    25   7.2  
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    25   7.2  

>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 381 NLFYCEDETVTYNCELENDAQLVQILENVCTQLFSFYRSKEIQLQRFTLQFIPTLIY--N 554
           N+F  E++   Y C  +    + ++L+    Q F F    EI+ + F+ Q  P L+   N
Sbjct: 5   NVFRLEEKR--YKCRADTIPDMSEVLDPNDPQSFGFEALVEIKPRVFSFQKAPGLLILKN 62

Query: 555 YLSSVAQ 575
           Y+SS  Q
Sbjct: 63  YVSSELQ 69


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/72 (23%), Positives = 34/72 (47%)
 Frame = +3

Query: 378 FNLFYCEDETVTYNCELENDAQLVQILENVCTQLFSFYRSKEIQLQRFTLQFIPTLIYNY 557
           F L     E +  NC   +   ++  +EN     F +Y S + Q+    L F+  LI++ 
Sbjct: 292 FTLIPTYQEVMASNCSKYDSTLMLTFIENHDLYRFPYYTSDQSQIMG-ALSFV--LIWDG 348

Query: 558 LSSVAQGKKKTY 593
           + S+  G+++ +
Sbjct: 349 IPSIFYGQEQGF 360


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 645 HLQLQSCICQLAMFLCT 595
           H   QSC CQ   F+C+
Sbjct: 625 HFSFQSCACQTLFFICS 641


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 20/78 (25%), Positives = 31/78 (39%)
 Frame = +3

Query: 276 LITEWLNEYTSLQENEVQSFAAEHEHNHEIATAIFNLFYCEDETVTYNCELENDAQLVQI 455
           ++ EW  EY +  +N++       +   E  T   NL     ET     E EN       
Sbjct: 210 IVWEWKEEYHNRIKNQMSRLGGSFDWTREAFTMDENLSRAVVETFVRLHE-ENIIYRANR 268

Query: 456 LENVCTQLFSFYRSKEIQ 509
           L N CT L +   + E++
Sbjct: 269 LVNWCTALQTTLSNLEVE 286


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +3

Query: 306 SLQENEVQSFAAEHEHNHEIATAIFNLFYCEDETVTYNCELENDAQ 443
           SL   E      EHE  HE    +  L+     TV Y C    DA+
Sbjct: 145 SLSSGETMLQFPEHEEQHECNREMEQLYESASSTV-YPCSFWEDAE 189


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 504 IQLQRFTLQFIPTLIYNYLSSVAQGKKKTYRCIETLLIGIYNFEVVDE 647
           +Q +R ++Q  P  I +  +   + K    RCI TL+  +  F+VVD+
Sbjct: 38  LQSRRASMQETPWTIKDSFN--VETKDVVQRCIHTLIPTVNFFDVVDD 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,795
Number of Sequences: 5004
Number of extensions: 50166
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)