Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18j07
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    29   0.052
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.6  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   3.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 28.7 bits (61), Expect = 0.052
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 489  YRSKEIQLQRFTLQFIPTLIYNYLSSVAQGKKKTYRCIET 608
            Y  K     +  L  +PTLI NY+ +V +GK      ++T
Sbjct: 882  YALKFFPFDKHILDKLPTLISNYIEAVKEGKFMNVNMLDT 921


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 375 IFNLFYCEDETVTYNCELENDAQLVQILENV 467
           I+ LF+  D+   Y+ EL   A+   ++EN+
Sbjct: 38  IYELFWHVDQPTVYHPELYQKARTFNLVENL 68


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 375 IFNLFYCEDETVTYNCELENDAQLVQILENV 467
           I+ LF+  D+   Y+ EL   A+   ++EN+
Sbjct: 38  IYELFWHVDQPTVYHPELYQKARTFNLVENL 68


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 449 TDIRECLYTTI*FL*IK-RNTTSKIYVTIHSHSYI*LFELCGTR*KK 586
           +D+  C+   + F+      T +K+  T   H+YI    LCG   K+
Sbjct: 11  SDVSSCVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYESLCGRHEKR 57


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 449 TDIRECLYTTI*FL*IK-RNTTSKIYVTIHSHSYI*LFELCGTR*KK 586
           +D+  C+   + F+      T +K+  T   H+YI    LCG   K+
Sbjct: 11  SDVSSCVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYESLCGRHEKR 57


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 631 KLYMPISNVSMHLYVFFLPCATEL 560
           K+Y+ +  + MH+    LPC   L
Sbjct: 24  KVYVSLGALKMHIRTHTLPCKCHL 47


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 172 YIINLILSCASIYFFI*ILVLN*PITQSNFKVKIILFINI 53
           Y +NLI+ C SI  ++ +L    P        KI L INI
Sbjct: 238 YTVNLIVPCVSI-SYLSVLAFYLPADSGE---KIALCINI 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,573
Number of Sequences: 438
Number of extensions: 3630
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)