Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18j05
         (636 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065609-1|BAC05836.1|  313|Homo sapiens seven transmembrane hel...    34   0.49 
BC036202-1|AAH36202.1|  584|Homo sapiens coiled-coil domain cont...    30   7.9  
BC015057-1|AAH15057.1|  193|Homo sapiens CCDC36 protein protein.       30   7.9  
AK058049-1|BAB71640.1|  388|Homo sapiens protein ( Homo sapiens ...    30   7.9  

>AB065609-1|BAC05836.1|  313|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 313

 Score = 33.9 bits (74), Expect = 0.49
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 231 ILLFVYNILIIILEV*FCKRQMREMSLFTESSTMVVTVFLP*VMI 365
           +LLF Y I++I L   FC+ Q +  S      T+V  +F+P V I
Sbjct: 214 VLLFSYAIILITLRTHFCQGQNKVFSTCASHLTVVSLIFVPCVFI 258


>BC036202-1|AAH36202.1|  584|Homo sapiens coiled-coil domain
           containing 36 protein.
          Length = 584

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 633 IDIGIHLRHRKTHSSSKVRGQTRIFYLYST 544
           +D G HLRH K    + + G+  IF  Y T
Sbjct: 49  LDFGAHLRHSKQSQQNYLEGEPSIFTKYQT 78


>BC015057-1|AAH15057.1|  193|Homo sapiens CCDC36 protein protein.
          Length = 193

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 633 IDIGIHLRHRKTHSSSKVRGQTRIFYLYST 544
           +D G HLRH K    + + G+  IF  Y T
Sbjct: 49  LDFGAHLRHSKQSQQNYLEGEPSIFTKYQT 78


>AK058049-1|BAB71640.1|  388|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25320 fis, clone TST00267. ).
          Length = 388

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 633 IDIGIHLRHRKTHSSSKVRGQTRIFYLYST 544
           +D G HLRH K    + + G+  IF  Y T
Sbjct: 66  LDFGAHLRHSKQSQQNYLEGEPSIFTKYQT 95


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,229,560
Number of Sequences: 237096
Number of extensions: 1547211
Number of successful extensions: 5749
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5749
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)