Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18j05
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.5  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   4.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   5.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 433 MSSIYRITKSCMFFCKKTTMI 371
           M+  Y +TKS MFF   T+++
Sbjct: 138 MAIPYAVTKSAMFFFAATSLL 158


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 457 PWRYWLMAMSSIYRITKSCMFFCKKTTMIYCIITYGRKTV 338
           P  Y ++  S +YRI  S  F     + +  +   GRKT+
Sbjct: 376 PGXYTMVIGSGVYRIGSSVEFDWCAVSCLRELRNLGRKTI 415


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 364 YNKSWSSSCKKTY 402
           YN +++++CKK Y
Sbjct: 343 YNNNYNNNCKKLY 355


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 576 GQTRIFYLYSTSIWISSI*QYNIFRVNY 493
           G   + Y+ S +IW+  I  YN    NY
Sbjct: 103 GGVEMLYVPSENIWLPDIVLYNNADGNY 130


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 406 SCMFFCKKTTMIYCIITYGRK 344
           SC  F ++    YC + +GRK
Sbjct: 418 SCSSFFQQFFHCYCPVRFGRK 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,947
Number of Sequences: 438
Number of extensions: 3584
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)