Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18j02
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    28   1.4  
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    27   2.5  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   3.3  
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   4.3  
SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence orphan|Schizo...    26   5.7  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    26   5.7  
SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c...    25   9.9  

>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -1

Query: 258 IVKYFLLLWTCSVRLCLFQQDKHFFPINYKFFLKYLDAHWLDYISMNF*LNFQVKQLIH 82
           + KY L   TCS+RLCL +        ++  + K +   + D+  ++  L    K L+H
Sbjct: 505 VEKYTLSSITCSLRLCLLEFPDSLIRSSFYDYFKAIYTTYTDFEDLDHRLYSIKKCLLH 563


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 353 PK-SPITLEEKIGLVKKLANSGADIKELNTVRKVISDLKGGQLAVKAQPAQVVSLILSDI 529
           PK SP T+ E I     L N   +  EL     +  D   G  +V ++P Q VS++LS  
Sbjct: 261 PKHSPATVNEHISPPSALTNPSTE--ELKPSTSLPIDQ--GNASVVSKPTQQVSIVLSQN 316

Query: 530 VGDPLD 547
              P+D
Sbjct: 317 ASLPVD 322


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = -3

Query: 193 TFFPNKL*VFPKIFR-CSLVGLYFNELLIKFSGKTADTLL-LKICIKS-FMNNLHI 35
           T+F     V P IF  C+++ L  +E+L K +G   +TLL ++ C K+  + N H+
Sbjct: 467 TYFLYMKYVHPFIFSLCNIIPLNPDEVLRKGTGTLCETLLTVEACTKNIILPNKHV 522


>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 194 LSCWNRQSRTEHVQRSRKYFT 256
           L+CWNR  +T+     R+++T
Sbjct: 196 LTCWNRDDKTDMPSSPREWYT 216


>SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence
           orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -1

Query: 258 IVKYFLLLWTCSVRLCLFQQDKH---FFPINYKFFLKYL 151
           I+ +F+  W   +    F+  K    F+ IN +FF+KY+
Sbjct: 17  ILTFFVYEWNHDITCLNFKVKKRRGDFYVINERFFIKYI 55


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 320 KKRGGSALLPLPKSPITLEEKIGLVKKLANSGADIKELN 436
           K   GS++ P+   P  L   + L+KKL  +GA+  +++
Sbjct: 176 KAAKGSSIKPIELLPKLLPVYVELIKKLTEAGAEYIQID 214


>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
           catalytic subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +2

Query: 407 NSGADIKELNTVR-KVISDLKGGQLAVKAQPAQVVSLILSDIVGDPLDLIASGPTVQN 577
           NSG +   L+ +  +       G + V A+P+     +   I+G P D I   PT  N
Sbjct: 41  NSGGEFVLLDKLHGRFARSCSVGDVVVSAKPSDSKQHVCKRIIGMPGDTIYVDPTSSN 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,193
Number of Sequences: 5004
Number of extensions: 53172
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)