Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18j02
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1149 + 30753463-30754695,30754834-30755017,30755321-307565...    33   0.21 
11_01_0622 + 4996584-4996800,4996975-4997060,4997112-4997492,499...    30   1.9  
12_01_0656 - 5554906-5555194,5555640-5556178                           29   2.6  
10_08_0328 - 16805296-16806121,16806493-16807274                       28   5.9  
09_03_0023 + 11617562-11617692,11617773-11617844,11620438-116205...    28   5.9  

>03_05_1149 + 30753463-30754695,30754834-30755017,30755321-30756549,
            30756702-30756816,30757126-30758084
          Length = 1239

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 5/49 (10%)
 Frame = +3

Query: 195  YLVGTGKAVQNMSREVENILQSKIKYG----IISI-PMGSLDVFNKSRN 326
            ++VG G+ + ++SREV ++L S + YG     +S+  +G+  ++ K+RN
Sbjct: 1118 FIVGMGEMIPDLSREVVHLLDSSVMYGATTSALSLGALGAAAMYGKARN 1166


>11_01_0622 +
           4996584-4996800,4996975-4997060,4997112-4997492,
           4997585-4997605
          Length = 234

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = +2

Query: 401 LANSGADIKELNTVRKVISDLKGGQLAVKAQPAQVVSLILS 523
           +   GAD++  + ++K  +D++GG   + A P +V+  ++S
Sbjct: 1   MRQEGADVRGSHKIKKTTADVEGGGEWINALPEEVLQHVMS 41


>12_01_0656 - 5554906-5555194,5555640-5556178
          Length = 275

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = -1

Query: 513 SETT*AGCA---FTASWPPFKSDITFLTVFNSLISAPELANFFTSPIFSSKVIGDFGKGS 343
           S+ T A C+   F   W   K+DITFLT    L + P  A+  +   FS ++I D  K  
Sbjct: 118 SKETHAKCSMLGFDVKWDANKADITFLTKTVVLETVP--ASIASLSAFSPRMIADI-KQY 174

Query: 342 NAEPPRFLI 316
              P R+++
Sbjct: 175 TLMPTRYIL 183


>10_08_0328 - 16805296-16806121,16806493-16807274
          Length = 535

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = +3

Query: 39  CKLFINDLIQIFKSSVSAVLPE------NLIRSSLKYNPTNEHLNILGKTYNLLGKNVYL 200
           C+L   + + +  + ++  LP+      NL    L +N  +  ++ LG +YN    +VYL
Sbjct: 369 CRLLSLENLDLSNNKLTGKLPDCWWNLQNLQFMDLSHNDFSGEISALGTSYNCSLHSVYL 428

Query: 201 VGTG 212
            G G
Sbjct: 429 AGNG 432


>09_03_0023 +
           11617562-11617692,11617773-11617844,11620438-11620595,
           11620677-11620939,11621041-11621167,11621748-11621816,
           11621931-11622120,11622309-11622672
          Length = 457

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 301 WTYLTNQETRWFSITAFAKITNNFRR 378
           W +L   E R F+     K TNNF+R
Sbjct: 143 WDHLEKNENRQFTYEELEKFTNNFQR 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,870,405
Number of Sequences: 37544
Number of extensions: 288766
Number of successful extensions: 739
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)