Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18h21
         (494 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.0  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   3.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.1  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   9.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.5  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +1

Query: 208 SPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 333
           S Y G    L  H PT       +V   + ++HPN   N  +
Sbjct: 370 STYSGSPTELPKHLPTSLTKSKMEVMELSDLHHPNCKINRKV 411


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 373 TISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNEL 492
           TI   ++ I  +L   +P DP +  +   YK D  K + L
Sbjct: 146 TILAAIVGIVMVLII-HPGDPRIKSVVTAYKADYTKISTL 184


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 259 YPFKPPKVAFTTRIYHPNINSN 324
           Y F  P+V +T + +HP    N
Sbjct: 138 YNFDYPQVPYTVKNFHPRCAVN 159


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 213 LSRRSFLPYHTFPYRLPF 266
           ++  + +PYH  PY  P+
Sbjct: 69  MASMNIVPYHMSPYGHPY 86


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 393 LNLLTSMRSQPRRPFG 440
           LNL T++ SQP   FG
Sbjct: 370 LNLSTALMSQPPPNFG 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,019
Number of Sequences: 438
Number of extensions: 3825
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)