Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18h14
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.6  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 412 WNEREARKALSKGNSKALTSLRQKLR 489
           W+ REAR+A +    + L +L  K +
Sbjct: 3   WDRREARRARTAFTYEQLVALENKFK 28


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
 Frame = -1

Query: 136  GRVLLARPR---CCSLTPSPSQLQRNDSYLQELVNASCP 29
            GR +  RP       L+PSPS   RND     L +   P
Sbjct: 1362 GRPVPERPERVPTVDLSPSPSDRGRNDDGSDRLTSPPTP 1400


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 225 RNYTLYTQSSE 257
           RNYTL+ ++SE
Sbjct: 282 RNYTLFNENSE 292


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/33 (27%), Positives = 13/33 (39%)
 Frame = -1

Query: 106 CSLTPSPSQLQRNDSYLQELVNASCPRLTSYVK 8
           C L P+P  L      LQ+      P +   V+
Sbjct: 219 CPLNPNPQPLTGQQELLQDFSKRFSPAIRGVVE 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,540
Number of Sequences: 438
Number of extensions: 2580
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)