Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18h02
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    41   1e-04
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    34   0.020
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    33   0.036
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.0  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.3  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    27   3.1  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   3.1  
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce...    27   3.1  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   5.4  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    25   7.2  
SPCP20C8.02c |||S. pombe specific UPF0321 family protein 1|Schiz...    25   7.2  

>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +2

Query: 32  CAVCNQ---KTQRRCARCLNIYYCNTEHQRQDWKRHKSEC 142
           C+ C +   KTQR CA C  I+YC+   Q+ DW  HK EC
Sbjct: 49  CSTCTEEKVKTQR-CAACKIIHYCSKGCQKADWPFHKLEC 87


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
 Frame = +2

Query: 29  CCAV-CNQKTQR-RCARCLN----IYYCNTEHQRQDWKRHK 133
           CC + CN +  R +C +CLN     Y+C  E  R  W  HK
Sbjct: 10  CCGIDCNNEADRLQCPKCLNDGVKSYFCGQECFRNSWNIHK 50


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
 Frame = +2

Query: 17  GGLACCA--VCNQKTQR-----RCARCLNIYYCNTEHQRQDWKRHKSEC 142
           GG+  CA  +CN+  +      +C RC    YC+ E Q Q W  H   C
Sbjct: 475 GGIRRCANLLCNKWEEHSRQFAKCRRCRRTKYCSKECQHQAWPGHSRWC 523


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/81 (19%), Positives = 33/81 (40%)
 Frame = +2

Query: 32  CAVCNQKTQRRCARCLNIYYCNTEHQRQDWKRHKSECIPKLTKQLAKSDNFGECSTVTKE 211
           C +C  +    C  CL     +  H+R ++ R     + K+ K  ++S +     T  +E
Sbjct: 7   CQLCETRRPSICESCLKKQLYDFYHKRDEFSRDIESELEKVAKLKSESFSLKGKITQKEE 66

Query: 212 AAKEIGNIAQNYQHDVTKVCN 274
               + N+A +     +  C+
Sbjct: 67  LTYRLQNLAASLNEKKSLSCD 87


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 41  CNQKTQRRCARCLNIYYCNTEHQRQDWK-RHKSECIPKLTKQLAKSDNF 184
           CN+  Q  C RCL      T  +R + K RH    +  L  QLA+ ++F
Sbjct: 68  CNR--QYPCTRCLKYGEACTYDERDNRKKRHSLSYLHSLESQLARLESF 114


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 503 SSEKEILNESVQQLSTVDFSTATGSNVLRTINSTDTNMPILPEPTA-RVKE 652
           + ++++LN  +QQ+     +TA  S+V  ++N T  N P  P+ +  R KE
Sbjct: 93  TQQEDLLNTLLQQMEDTKITTAEKSSVQSSLN-TKENTPQQPKKSRNRQKE 142


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 468 SSLVNTTLEITELSLCPDDVVLLFCVCCMFFLKSNLFCLLTLLPSETL 325
           S+ V++ L +  L  C +  V    VC +F L++    LLT L ++ +
Sbjct: 505 STFVSSALAVELLKFCLNSYVNFVSVCTLFGLETPRDALLTTLSNKAV 552


>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +2

Query: 464 EDLNSESAITYEGSSEKEILNESVQQLSTVD 556
           EDLNSE       SSE EI  E VQ+ +  D
Sbjct: 40  EDLNSEDEFYQSNSSEDEI-EEEVQESTIAD 69


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = -2

Query: 588 LNTLDPVAVEKSTVLSCCTDSFNISFSEEPS*VMALSLFKSSLVNTTLEIT 436
           + +L+ + V+KST+++     +NI+   E   +  +S + +SLVN   EI+
Sbjct: 354 IESLEKLKVKKSTMINEIVHRYNINEINEEGIMTEVSKY-ASLVNKNYEIS 403


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 503 SSEKEILNESVQQL-STVDFSTATGSNVLRTINS 601
           S++K IL +  + L S+ DFS    ++V+RT++S
Sbjct: 52  STDKIILQQKREPLVSSTDFSQQKSTSVMRTLSS 85


>SPCP20C8.02c |||S. pombe specific UPF0321 family protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = -2

Query: 411 VVLLFCVCCMF 379
           ++LLFC+CC+F
Sbjct: 1   MLLLFCICCVF 11


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,792
Number of Sequences: 5004
Number of extensions: 41020
Number of successful extensions: 135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)