Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18h02
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1014 - 23586552-23587224,23587402-23587463,23587735-235879... 46 2e-05
07_03_0378 + 17446311-17446514,17446814-17446927,17447124-174472... 42 4e-04
03_02_0701 - 10523053-10523220,10523802-10523916,10524102-105241... 39 0.003
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 38 0.007
03_05_0841 - 28104977-28105142,28105439-28105502,28105586-281056... 38 0.009
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942 37 0.012
01_06_1840 - 40250285-40251022,40251121-40251283,40251523-40251731 37 0.012
01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635... 36 0.021
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046... 36 0.037
04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959 33 0.26
02_02_0344 + 9182775-9183539,9195912-9196028 29 4.2
08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736 27 9.8
05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,114... 27 9.8
>08_02_1014 -
23586552-23587224,23587402-23587463,23587735-23587950,
23588125-23588209,23589232-23589389,23589505-23589625,
23590081-23590243,23590330-23590415,23590660-23590742,
23590816-23591677,23593266-23593693
Length = 978
Score = 46.4 bits (105), Expect = 2e-05
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = +2
Query: 17 GGLACCAVCNQKTQRRCARCLNIYYCNTEHQRQDWKR-HKSECIPKLTKQLAKSDNFGEC 193
G CAVC + T RC +C + YC+ + Q W++ HK+EC P T A D+ E
Sbjct: 118 GAKGVCAVCFRPTTFRCKQCKAVKYCSFKCQIAHWRQGHKNECRPPSTD--ANHDDVAEL 175
Query: 194 STVTKEAAKEIG----NIAQNYQHDVTKVCND 277
S + ++ NIA+ K ND
Sbjct: 176 SVAKERKIEQTSASEENIAETNTAATVKNLND 207
>07_03_0378 +
17446311-17446514,17446814-17446927,17447124-17447242,
17447595-17447641,17447720-17447820,17450769-17450840,
17451290-17451403,17451495-17451500,17451501-17451611
Length = 295
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 41 CNQKTQRRCARCLNIYYCNTEHQRQDWKRHKSECIPKLTKQLAKSD 178
C + +RRC C + YC+ HQ W HK EC +L +Q+++ D
Sbjct: 46 CAGEARRRCGGCGAVAYCSRAHQTVHWGFHKEEC-ARLAEQMSRID 90
>03_02_0701 -
10523053-10523220,10523802-10523916,10524102-10524172,
10524263-10524420,10524497-10524590,10524678-10524766,
10525322-10525419,10525492-10525625,10525714-10525797,
10525903-10526151
Length = 419
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +2
Query: 20 GLACCAVCNQ-KTQRRCARCLNIYYCNTEHQRQDWKR-HKSECIPKLTKQLAKSDNFGEC 193
G C C K + C+ C YC+ +HQ W+ HKS+C+ ++ A S F
Sbjct: 188 GAPVCHWCGTWKGDKLCSSCKKARYCSEKHQTLHWRSGHKSDCLQLISSSEASSSIFPAV 247
Query: 194 STVTKEAAKEIGNIAQNYQ 250
V + IA +Y+
Sbjct: 248 GKVPASKSWPEYEIAIDYE 266
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 32 CAVCNQKTQRRCARCLNIYYCNTEHQRQDWKR-HKSEC 142
CA C+ + RC+RC ++ YC+ + Q W++ HK C
Sbjct: 32 CATCHGPAKTRCSRCKSVRYCSGKCQIIHWRQGHKQTC 69
>03_05_0841 -
28104977-28105142,28105439-28105502,28105586-28105655,
28105743-28105852,28106217-28106295,28106610-28106691,
28106791-28106879,28107351-28107425,28107728-28107862,
28108018-28108163,28108380-28108491
Length = 375
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 20 GLACCAVCNQKTQRRCARCLNIYYCNTEHQRQDWKRHKSEC--IPKLTKQLAK 172
G C + R+C+ C +YC + QR++WK H+ EC I LT+ K
Sbjct: 57 GSNCDNCFASRNLRKCSVCRVAWYCGSACQREEWKLHQLECRAIAALTEDRKK 109
>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
Length = 379
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 59 RRCARCLNIYYCNTEHQRQDWK-RHKSECIPKLTKQLAKSDNFGECSTVTKEAAKEI 226
RRC+ C + YC+ Q WK HKS C+P +A + G AA ++
Sbjct: 320 RRCSVCSGVIYCSRACQAMHWKVAHKSACVPMAHWLVAANAGAGNAVGAAAAAAAQM 376
>01_06_1840 - 40250285-40251022,40251121-40251283,40251523-40251731
Length = 369
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 59 RRCARCLNIYYCNTEHQRQDWKR-HKSECIP 148
RRC+ C YC+ Q DWKR HK++C+P
Sbjct: 327 RRCSVCGAANYCSRACQALDWKRAHKAQCVP 357
>01_05_0451 -
22361617-22361811,22362728-22362842,22363443-22363513,
22363600-22363754,22363843-22363933,22364049-22364104,
22364910-22365027,22365087-22365200,22365289-22365504
Length = 376
Score = 36.3 bits (80), Expect = 0.021
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +2
Query: 56 QRRCARCLNIYYCNTEHQRQDWK-RHKSECIPKLTKQLAKSDNFGECSTVTKEAAKEI-G 229
++ C+RC YC+ +HQ W+ +HK+EC Q++ S N S + +A K G
Sbjct: 151 EKVCSRCRKSSYCSKKHQELHWRAKHKNEC-----HQISGSHN---ASAIMPDAGKVFAG 202
Query: 230 NIAQNY 247
NI Y
Sbjct: 203 NIWPEY 208
>06_03_0968 -
26402154-26403834,26404322-26404383,26404473-26404682,
26404776-26404860,26405461-26405618,26405745-26405868,
26405955-26406123,26406202-26406287,26406379-26406467,
26406564-26406735,26407820-26408193
Length = 1069
Score = 35.5 bits (78), Expect = 0.037
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 17 GGLACCAVCNQKTQRRCARCLNIYYCNTEHQRQDWKR-HKSECIPKLTKQLAKS 175
GG CA C ++C+ C + YC+ Q + W+ HK +C KQ+ KS
Sbjct: 100 GGGEPCAACGYIATKKCSGCKRVRYCSQGCQSKHWQSGHKFKC-----KQMKKS 148
>04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959
Length = 395
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 59 RRCARCLNIYYCNTEHQRQDWK-RHKSECIP 148
RRC+ C + YC+ Q WK HK+EC P
Sbjct: 340 RRCSVCGVVNYCSRACQALHWKTAHKAECTP 370
>02_02_0344 + 9182775-9183539,9195912-9196028
Length = 293
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 467 DLNSESAITYEGSSEKEILNESVQQLSTVDFSTATGSN--VLRTINSTDT 610
+ N E I +EG E ++ E + T+ S ATG+ TI+S DT
Sbjct: 83 EANDEMQI-FEGDDEMQVFEEMSDRADTMHTSVATGATTATANTISSEDT 131
>08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736
Length = 869
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 646 HPGCRFRKNGHICICT 599
HPGC N HI +CT
Sbjct: 204 HPGCTITGNTHIMVCT 219
>05_01_0166 +
1145829-1145971,1146211-1146235,1147330-1147425,
1147544-1147645,1147767-1147889,1147996-1148622,
1148710-1148883,1148965-1149181,1149312-1149394,
1149478-1149573,1149676-1149724,1149850-1150088,
1150547-1150618,1150694-1150804,1150930-1151282,
1151377-1151464,1151691-1151789,1151860-1151991,
1152119-1152222,1153179-1153215,1153334-1153367,
1153451-1153467
Length = 1006
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +2
Query: 32 CAVCNQKTQRRCARCLNIYYCNTEHQRQDWKRHKSECIPKLTKQLAKSDNFGEC 193
C +C + + + L+ + T + DW E + K +L KS +FG C
Sbjct: 314 CFLCPNSSIQPSTKYLSAFADLTSIDKLDWSNLVFEWLMKHLSKLEKSKSFGGC 367
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,279,182
Number of Sequences: 37544
Number of extensions: 239923
Number of successful extensions: 665
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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