Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18g20
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   2.0  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   2.0  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   2.0  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   2.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.6  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   8.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.1  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 109 HSNNYMKFVCNTMLSLY 159
           ++NNY K  CN    LY
Sbjct: 92  NNNNYKKLYCNNYKKLY 108


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 109 HSNNYMKFVCNTMLSLY 159
           ++NNY K  CN    LY
Sbjct: 92  NNNNYKKLYCNNYKKLY 108


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 109 HSNNYMKFVCNTMLSLY 159
           ++NNY K  CN    LY
Sbjct: 92  NNNNYKKLYCNNYRKLY 108


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 386 WFTSQGTTYFQLLSRN 339
           W+  +G  YF+LLS N
Sbjct: 71  WWDYKGIVYFELLSPN 86


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 334 IWFLLSNWKYVVPW 375
           I F++  W Y +PW
Sbjct: 163 ILFIVLIWTYTIPW 176


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 386 WFTSQGTTYFQLLSRN 339
           W+  +G  YF+LL  N
Sbjct: 72  WWDHKGIVYFELLPPN 87


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 151 ITSCYIQISYSYSNDSLQHFIL*YL*VETRQI 56
           I   YI+I     +DSL   +  Y+  ET+Q+
Sbjct: 221 IAVLYIRIGLRIQSDSLAENVEGYVHGETKQV 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,077
Number of Sequences: 438
Number of extensions: 2499
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)