Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18g02
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            30   0.023
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    26   0.38 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   8.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.2  

>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 29.9 bits (64), Expect = 0.023
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -1

Query: 669 HMHXDCCFSTILTFSRLCTSLYAXVYGWVQNLLEIYQHPFFQI 541
           H   D      +TF  + T        W+++ +E+Y H FFQ+
Sbjct: 29  HFELDYMLGRKITFFCMATGFPRPEITWLKDGIELYHHKFFQV 71


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 652 LFLNNSDIFSALYFLICIXLRMG 584
           LFLN + +F  ++ LIC+ L +G
Sbjct: 268 LFLNMASVFMRIFNLICMMLLIG 290


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 649 FLNNSDIFSALYFLICIXLRMG 584
           FLN + +F  ++ LIC+ L +G
Sbjct: 237 FLNMASVFMRIFNLICMMLLIG 258


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 464 RYNSCTSANSSSRIRRTVR 520
           R NSC   N+SSR+   +R
Sbjct: 371 RQNSCNIYNASSRMENNLR 389


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 355 SNSGSFPKLNSASDLLLAMNISFSVSQ 275
           S   S PKLN ++ L+     +F VSQ
Sbjct: 362 STGSSIPKLNLSTALMSQPPPNFGVSQ 388


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 654 CCFSTILTFSRLCTSLYAXVYGWV 583
           C F     FS L T +Y    GW+
Sbjct: 143 CNFKAYCLFSFLNTIVYCVPAGWI 166


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 498 AESEEQSDNIARDFLSGKMGVDKFLEDFEPIRKXMHIRKYK 620
           A +EE+     RD  SGK+G  +    +   R  +  + YK
Sbjct: 590 AYTEEELQAALRDIQSGKLGTRRAAVIYGIPRSTLRNKVYK 630


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,880
Number of Sequences: 438
Number of extensions: 2765
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)