Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18f23
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0578 + 10869627-10869702,10870489-10870555,10870813-108709...    36   0.020
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551...    31   0.97 
08_02_1269 + 25755256-25756203                                         29   3.0  

>09_02_0578 +
           10869627-10869702,10870489-10870555,10870813-10870963,
           10871043-10871111,10871992-10872030,10872113-10872186,
           10872281-10872347,10872902-10873075,10873169-10873852
          Length = 466

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 332 LEFKLVRSVDDLEN-EETSFGPDMCHQVFGENENIFGYTDLHIKLYYSAGSLQTYLGIDY 508
           L F   R+ D+  +   TS  P   +  FGE+  I+GY +L I ++ SA S   Y  I +
Sbjct: 57  LVFDTARNPDEAGSANSTSLQPFDLNHFFGEDGKIYGYKNLKINVWISAISFHAYADISF 116

Query: 509 TDKIEPSK 532
            +  +  K
Sbjct: 117 EETSDGGK 124


>11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,
            5513752-5514597,5515515-5515766,5522344-5525206
          Length = 1449

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 15   KFHSVRQIDFGEYLGKPF*SKH---IQGNGIEAKKICFLLF 128
            K H++ QID   Y G P  S H   I+ +GIE K  CFL F
Sbjct: 1243 KIHNLDQIDIEVYKGMPLVSPHLTKIELSGIELKN-CFLNF 1282


>08_02_1269 + 25755256-25756203
          Length = 315

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = +2

Query: 443 TDLHIKLYYSAGSLQTYLGIDYTDKIEPSKSEGMKADDVEGALTKVIAPGVYH*FG 610
           T  H K  Y   S+    G DY+  +  SKS    AD++  +      PGVYH FG
Sbjct: 97  THCHFKAVYVLLSIGGGDGKDYS--LPSSKSAADVADNLYNSFLGGSRPGVYHPFG 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,713,951
Number of Sequences: 37544
Number of extensions: 316901
Number of successful extensions: 573
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)