Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18f21
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical ...    31   0.77 
Z83216-2|CAB05673.1|  315|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z81100-4|CAE11309.1|  333|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF047657-2|AAK18950.2|  358|Caenorhabditis elegans Serpentine re...    29   3.1  
Z81100-2|CAB03192.2|  332|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical...    28   5.4  
AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical...    28   5.4  
Z81489-9|CAE17759.1|  326|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    27   7.2  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    27   7.2  
AC006693-2|AAF60378.2|  334|Caenorhabditis elegans Serpentine re...    27   9.5  

>AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical
           protein Y68A4A.2 protein.
          Length = 309

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 13/56 (23%), Positives = 31/56 (55%)
 Frame = +3

Query: 354 VLTSLHIPFHIFFSNINY*TD*CYFIYILARQFRNVLSYLILIFSEITLCIGFEII 521
           ++ ++ +PF++F + +N+  D   FIY +   F  ++    L+F  ++ C  F ++
Sbjct: 36  IIYTILLPFYLFTNKVNHKRDNEMFIYPITAHFCQMVKVSYLVF--VSACFNFILV 89


>Z83216-2|CAB05673.1|  315|Caenorhabditis elegans Hypothetical
           protein C08F11.2 protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = -1

Query: 533 MTYKYNFKSNTQGNLRKY*Y*VREHVPKLTRQYIYKITLVCLVIYIRKKYMERNV*GSQN 354
           MT  Y    N + N   Y + V  +V  LT  +   I  V L++Y R+K ++    G + 
Sbjct: 1   MTTSYEVSENKKMNWMLYFHIV--NVCLLTINFANNIFFVLLIVYNRRKKLDLRDQGFKE 58

Query: 353 MWSPIQVIFSII 318
           + +PI + F  I
Sbjct: 59  LHAPIFINFFFI 70


>Z81100-4|CAE11309.1|  333|Caenorhabditis elegans Hypothetical
           protein K08G2.12 protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 126 FHIYFKFYSRYKENKTGGLATTHGHSVTCELIVVH 22
           F +YF +Y++   N T  L + HG   T  +++VH
Sbjct: 263 FSVYFNYYNQGANNLTFILISIHGVLSTITMLMVH 297


>AF047657-2|AAK18950.2|  358|Caenorhabditis elegans Serpentine
           receptor, class h protein270 protein.
          Length = 358

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 120 IYFKFYSRYKENKTGGLATTHGHSVTCELIVVH 22
           IYF FY +   N    L   HG S +  LI++H
Sbjct: 266 IYFNFYHQVANNFCSLLLAVHGSSSSIFLILIH 298


>Z81100-2|CAB03192.2|  332|Caenorhabditis elegans Hypothetical
           protein K08G2.5 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 126 FHIYFKFYSRYKENKTGGLATTHGHSVTCELIVVH 22
           F +YF +Y++   N T  L   HG   T  +++VH
Sbjct: 262 FSVYFNYYNQGANNLTFILIAIHGVLSTITMLMVH 296


>AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical
           protein Y102A5C.25 protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 354 VLTSLHIPFHIFFSNINY*TD*CYFIYILARQFRNVLSYLILIFSEITLCIG 509
           ++ ++ +PF+I+ + +N+  D    IY +   F  ++    LIF  I+ C G
Sbjct: 35  IIYTVVLPFYIYANKVNHERDKEILIYPITNHFYKMVIVYYLIF--ISTCFG 84


>AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical
           protein Y102A5C.23 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +3

Query: 354 VLTSLHIPFHIFFSNINY*TD*CYFIYILARQFRN--VLSYLILIFSEITLCIGFEIIFV 527
           ++ ++ +PF+I  + +N+  D    IY + + F +  ++ YLI + + I++   F  +F 
Sbjct: 35  IIYTIVLPFYICANKVNHERDKEILIYPITKHFYHMVIIYYLIFVLTCISVFFCFYSLFS 94

Query: 528 S 530
           S
Sbjct: 95  S 95


>Z81489-9|CAE17759.1|  326|Caenorhabditis elegans Hypothetical
           protein C55A1.12 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 363 SLHIPFHIFFSNINY*TD*CYFIYILARQFRNVLSYLILIFSEITLCIGFEII 521
           SL +PF++F   IN   D    +Y +   F  ++    L+F+   + +GF II
Sbjct: 36  SLILPFYLFVGKINREKDKSTILYPITNHFSVMVKIGYLVFT--LMMVGFLII 86


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
           protein K08C7.3b protein.
          Length = 3672

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 111 KFYSRYKENKTGGLATTHGHSVTCELI 31
           +++   KE   GG    +GH+VTC+++
Sbjct: 284 RYFYAIKEIMIGGRCVCNGHAVTCDIL 310


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
           protein K08C7.3a protein.
          Length = 3704

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 111 KFYSRYKENKTGGLATTHGHSVTCELI 31
           +++   KE   GG    +GH+VTC+++
Sbjct: 284 RYFYAIKEIMIGGRCVCNGHAVTCDIL 310


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
           chain protein.
          Length = 3704

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 111 KFYSRYKENKTGGLATTHGHSVTCELI 31
           +++   KE   GG    +GH+VTC+++
Sbjct: 284 RYFYAIKEIMIGGRCVCNGHAVTCDIL 310


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
           protein.
          Length = 3704

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 111 KFYSRYKENKTGGLATTHGHSVTCELI 31
           +++   KE   GG    +GH+VTC+++
Sbjct: 284 RYFYAIKEIMIGGRCVCNGHAVTCDIL 310


>AC006693-2|AAF60378.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein271 protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 126 FHIYFKFYSRYKENKTGGLATTHGHSVTCELIVVH 22
           + IYF FY++   N +  + T HG + T  ++++H
Sbjct: 260 YAIYFDFYNQAANNISFIIITFHGLASTIIMLLIH 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,476,784
Number of Sequences: 27780
Number of extensions: 249131
Number of successful extensions: 625
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)