Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18f15
(575 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|... 103 1e-23
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.64
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 28 0.85
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 27 2.0
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 27 2.6
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 4.5
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 26 4.5
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 26 4.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.0
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma... 25 6.0
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2... 25 6.0
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi... 25 6.0
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 7.9
>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 340
Score = 103 bits (248), Expect = 1e-23
Identities = 57/145 (39%), Positives = 82/145 (56%), Gaps = 2/145 (1%)
Frame = +2
Query: 77 LLVGIGNPLLDISASVDEDLLKKYDLHPDDAIMAEEKHMPLYSELVDKYNAEYIAGGSVQ 256
+L G+ NPLLD + L+KY L +DA++A E M +Y E Y AGG+ Q
Sbjct: 5 ILFGLENPLLDYYVGGETATLEKYGLKSNDAVLASESQMGIYKEPC----VSYSAGGAAQ 60
Query: 257 NSLRVAQWILKKPNICTYFGCVGNDEYAKLLKERAIADGVHVQYQVSNEVATGTCAVLVT 436
NS R AQ++L PN + GCVG D++A +L E G+ ++ V TG CAV+++
Sbjct: 61 NSCRAAQYVL-PPNSTVFAGCVGQDKFADMLLESNEKAGLRSEFSVDPTTPTGVCAVVLS 119
Query: 437 GT--HRSLCANLGAAQHFTPDHLQK 505
+RSLC NLGAA ++ LQ+
Sbjct: 120 NNNKNRSLCTNLGAANNYKLKDLQQ 144
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 28.7 bits (61), Expect = 0.64
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -3
Query: 219 LSTSSE*SGMCFSSAIMASSGCRSYFFSKSSSTLADMSNKGFPMPTNNPSWSHMESETS 43
LS S S + +++ + SYF + SSST + S+ P+++ S S S++S
Sbjct: 121 LSYSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSS 179
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 28.3 bits (60), Expect = 0.85
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 254 QNSLRVAQWILKKPNICTYFGCVGNDEYAKLLKERAIADGVHV 382
+N+L +I+KK + Y GC G + Y+ R + G +
Sbjct: 187 RNALTPLDFIMKKNELMKYIGCFGVEAYSTASGTRTLQAGERI 229
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +1
Query: 226 CRVYCWWKRSEFIKSSTMDSKETKYLYLLWLC 321
CRVYC+ R+ +K D W+C
Sbjct: 44 CRVYCYLSRNGLLKRPKEDDSSANAQVKNWVC 75
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 2.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 226 CRVYCWWKRSEFIKSSTMDSKET 294
C++Y W S+ +++ST+ SKET
Sbjct: 175 CKIYDWVAGSKNLRASTIFSKET 197
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 236 IAGGSVQNSLRVAQWILKKPNICTYF-GCVGN 328
+ GG+V S R+ ILK +IC GC+ N
Sbjct: 1067 VVGGNVLTSQRITDVILKAFSICAASQGCMNN 1098
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 123 TLADMSNKGFPMPTNNP-SWSHMESETSIM*Y 31
T A + N+GFPMPT + +S+ +S M Y
Sbjct: 221 TQAGLPNQGFPMPTGSQLPFSNQQSSQPSMQY 252
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.8 bits (54), Expect = 4.5
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 101 LLDISASVDEDLLKKYDLHPDDAIMAEEKHMP-LYSELVDKYNAEYI 238
++D VDE+LL+ + DD E H+ SE VD AE I
Sbjct: 465 VVDSELEVDENLLEDATMIQDDESHEGESHLENSLSEYVDSVPAEEI 511
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 6.0
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = -3
Query: 216 STSSE*SGMCFSSAIMASSGCRSYFFSKSSSTLADMSNKGFPMPTNNPSWSHMESETS 43
STSS S SS++ +SS + S SSS++ S+ PT+ S S +S
Sbjct: 242 STSS--SSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSS 297
>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 318
Score = 25.4 bits (53), Expect = 6.0
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 314 GCVGNDEYAKLLKERAIADGVHVQ--YQVSNEVATGTCAVLV--TGTHRSL 454
GCVG+D + + DGV+V ++ N+ +TG ++V TG +R L
Sbjct: 65 GCVGDDAFGVEMLSGLKKDGVNVDNVKKIENK-STGVAMIIVEETGENRIL 114
>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 518
Score = 25.4 bits (53), Expect = 6.0
Identities = 14/49 (28%), Positives = 18/49 (36%)
Frame = -1
Query: 224 YTCQRVPSRVACVFLQP*WHRRGAGHTSSASPRQHWRICPTKDSLCPLI 78
Y VP V +F WH R P + + P D L P+I
Sbjct: 118 YPWDTVPKAVDRIFRSQNWHARRQKQFHLMKPAEERKQLPKYDYLLPII 166
>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 6.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 92 GNPLLDISASVDEDLLKKYDLHPDDAIMAEEKHMPLYSELVDKYNAEYI 238
GN LD+S E L +KY+++ +M ++++ KY A I
Sbjct: 137 GNSFLDLSVRQIEHLNRKYNVNVPFVLMNSFNTDEATAKVIKKYEAHKI 185
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +2
Query: 194 PLYSELVDKYNAEYIAGGSVQNSLRVAQWILKKPNICTYFGCVGNDEYAKLLKE 355
P+ + L D + GGS + S+ + + + Y GC+ +D+ +LL E
Sbjct: 1579 PMLARLSDSKSVHGEEGGSGKRSVSSLRNVSPSESTGGYEGCIFDDQQYQLLYE 1632
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,756
Number of Sequences: 5004
Number of extensions: 47667
Number of successful extensions: 160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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