Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18f15
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0012 - 24959542-24959684,24960132-24960192,24960995-249611... 169 1e-42
04_04_0520 - 25871932-25872074,25872234-25872294,25873267-258733... 134 4e-32
10_08_1010 + 22230329-22230658,22231033-22231298,22231411-222315... 37 0.010
01_06_1738 + 39570411-39571931 30 1.5
02_04_0500 + 23500769-23500951,23501200-23501285,23501442-235014... 29 2.7
10_08_0927 - 21614203-21614219,21615347-21615430,21616529-216166... 29 3.5
04_04_0352 + 24619621-24619757,24620102-24620411,24621022-246214... 29 3.5
11_06_0477 + 24057677-24059099,24059556-24060448,24060456-240605... 28 4.6
09_04_0108 + 14657020-14657193,14659040-14659355,14659728-146598... 27 8.1
05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589 27 8.1
03_05_1136 + 30634685-30634919,30635008-30635303,30635398-306357... 27 8.1
>02_05_0012 -
24959542-24959684,24960132-24960192,24960995-24961117,
24961196-24961262,24961510-24961580,24961650-24961747,
24962279-24962355,24963568-24963635,24963754-24963855,
24963945-24963976,24964066-24964112,24964263-24964316,
24964952-24965034
Length = 341
Score = 169 bits (411), Expect = 1e-42
Identities = 78/145 (53%), Positives = 102/145 (70%)
Frame = +2
Query: 71 EGLLVGIGNPLLDISASVDEDLLKKYDLHPDDAIMAEEKHMPLYSELVDKYNAEYIAGGS 250
EG+L+G+GNPLLDISA VD+ L KYD+ ++AI+AEEKH+P+Y EL K N EYIAGG+
Sbjct: 4 EGVLLGMGNPLLDISAVVDDAFLTKYDVKLNNAILAEEKHLPMYDELASKGNVEYIAGGA 63
Query: 251 VQNSLRVAQWILKKPNICTYFGCVGNDEYAKLLKERAIADGVHVQYQVSNEVATGTCAVL 430
QNS+RVAQW+L+ P +Y GC+G D++ + +K+ A A GV Y TGTCAV
Sbjct: 64 TQNSIRVAQWMLQTPGATSYMGCIGKDKFGEEMKKNAQAAGVTAHYYEDEAAPTGTCAVC 123
Query: 431 VTGTHRSLCANLGAAQHFTPDHLQK 505
V G RSL ANL AA + +HL+K
Sbjct: 124 VVGGERSLVANLSAANCYKSEHLKK 148
>04_04_0520 -
25871932-25872074,25872234-25872294,25873267-25873389,
25873465-25873531,25873710-25873780,25873853-25874004,
25874082-25874158,25874323-25874435,25874503-25874598,
25874703-25874734,25874838-25874884,25875015-25875068,
25875212-25875289,25875607-25875698
Length = 401
Score = 134 bits (325), Expect = 4e-32
Identities = 77/184 (41%), Positives = 103/184 (55%), Gaps = 39/184 (21%)
Frame = +2
Query: 71 EGLLVGIGNPLLDISASVDEDLLKK--------------------------YDLHPDDAI 172
EG+L+G+GNPLLDISA VDE L YD+ P +AI
Sbjct: 7 EGVLLGMGNPLLDISAVVDEAFLANSVLENDDIFHLGPLGVWKGGGVEGVIYDIKPGNAI 66
Query: 173 MAEEKHMPLYSELVDKYNAEYIAGGSVQNSLRVAQWILKKPNICTYFGCVGNDEYAKLLK 352
+AEEKH+P+Y+EL K N EYIAGGS QNS+RVAQW+L+ P +Y GC+G D++ + +K
Sbjct: 67 LAEEKHLPMYNELASKVNVEYIAGGSTQNSIRVAQWMLQIPGATSYMGCIGKDKFGEEMK 126
Query: 353 ERAIADGVH-------------VQYQVSNEVATGTCAVLVTGTHRSLCANLGAAQHFTPD 493
+ A G+H Y + TGTCAV + G RSL ANL AA + +
Sbjct: 127 KDAQTAGLHHCTYCLDLTIFKQAHYYEDDNAPTGTCAVCIVGGERSLVANLSAANCYRSE 186
Query: 494 HLQK 505
HL++
Sbjct: 187 HLKR 190
>10_08_1010 +
22230329-22230658,22231033-22231298,22231411-22231528,
22231842-22232050,22232297-22232750
Length = 458
Score = 37.1 bits (82), Expect = 0.010
Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 8/146 (5%)
Frame = +2
Query: 80 LVGIGNPLLDISASVDEDLLKKYDLHPDDAIMAEEKHMPLYSELVDKYNAEYIAGGSVQN 259
++G+G ++D S VD++ L + + + + +D + + AGGS+ N
Sbjct: 103 VLGLGQAMVDFSGMVDDEFLHRLGIQKGTRKVVNHEERGRVLRAMDGCSYKAAAGGSLSN 162
Query: 260 SLRVAQWILKKPNICTY-------FGCVGNDEYAKLLKERAIADGVHVQYQVSNEVATGT 418
SL VA L Y G VG+D + + +H + + TGT
Sbjct: 163 SL-VALSRLGSSRSTNYPELRIAMAGSVGSDPLGSFYRAKLRRANLHFLSKPVKDGTTGT 221
Query: 419 CAVLVT-GTHRSLCANLGAAQHFTPD 493
VL T R++ A G + + D
Sbjct: 222 VIVLTTPDAQRTMLAYQGTSSTLSYD 247
>01_06_1738 + 39570411-39571931
Length = 506
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 453 CAPISVLHNTSHQIIYRKKXCKKSIEAAKFFYASGFXVAVS 575
C+P V NT + +R+ CK+ I+ A+ GF ++V+
Sbjct: 260 CSPTGVSFNTLMRGFFREGRCKEGIKVAREMLQLGFGLSVA 300
>02_04_0500 +
23500769-23500951,23501200-23501285,23501442-23501490,
23501560-23501746,23502214-23502371,23502447-23502515,
23502692-23502750,23503140-23503176,23503493-23503564,
23503694-23503841,23504124-23504219,23505042-23505181,
23505304-23505419,23505614-23505659,23505747-23505923
Length = 540
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 125 DEDLLKKYDLHPDDAIMAEEKHMPLYSELVDKYNAE 232
DE +L +YD + DD+ + ++ + P ++ LV + N E
Sbjct: 311 DEVVLGQYDGYKDDSTVPDDSNTPTFASLVLRVNNE 346
>10_08_0927 -
21614203-21614219,21615347-21615430,21616529-21616607,
21616986-21616992,21617081-21617151
Length = 85
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 92 GNPLLDISASVDEDLLKKYDLHPDD-AIMAEEKHMPLYSELVDKYNAEY 235
G ++D S+ + + L K DL D +++E KHM L E V ++EY
Sbjct: 22 GGRVMDASSGISDLGLWKMDLSDDVYQLLSEVKHMNLMMETVATAHSEY 70
>04_04_0352 +
24619621-24619757,24620102-24620411,24621022-24621429,
24621773-24622357
Length = 479
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 110 ISASVDEDLLKKYDLHPDDAIMAEEKHMPLYSELVDKYNAE 232
I+ S EDL ++ ++ + E K PLY + +DK+ +E
Sbjct: 387 ITYSESEDLSDIFETDSEEEQVQESKEQPLYLDKLDKFPSE 427
>11_06_0477 +
24057677-24059099,24059556-24060448,24060456-24060578,
24060995-24061036
Length = 826
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = +2
Query: 80 LVGIGNPLLDISASVDEDLLKKYDL-----HPDDAIMAEEKHMPLYSELVDKYN 226
+VG+GNP DI D++ + YD+ DD + + ++ + +LV++ N
Sbjct: 136 IVGLGNPTTDI-GHADDEFPQDYDIMYQNFEDDDVVGFDNEYNEIVEKLVEQEN 188
>09_04_0108 +
14657020-14657193,14659040-14659355,14659728-14659887,
14661265-14661725,14663778-14663856,14664732-14664882,
14665414-14665467,14665724-14665888
Length = 519
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/39 (25%), Positives = 17/39 (43%)
Frame = +3
Query: 441 HTAHCAPISVLHNTSHQIIYRKKXCKKSIEAAKFFYASG 557
H HC +HNTSH + C + + +++G
Sbjct: 452 HVLHCECPKAIHNTSHSRSALRSICHCRVHPHRLIHSTG 490
>05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589
Length = 503
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 359 AIADGVHVQYQVSNEVATGTCAVLVTGTHRSLCANLGA 472
A A G HV ++ +A+ TCA LVT T + + GA
Sbjct: 131 AAATGSHVAAAITAAIASSTCA-LVTATTSVITSTTGA 167
>03_05_1136 +
30634685-30634919,30635008-30635303,30635398-30635790,
30635856-30636348,30636422-30636918
Length = 637
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 68 QEGLLVGIGNPLLD-ISASVDEDLLKKYDLHPDDAIMAE 181
Q G V G +L+ I A+VDE + Y HPD + +AE
Sbjct: 465 QGGNNVTAGTTILEAIKAAVDESTVIDYTEHPDKSSIAE 503
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,158,241
Number of Sequences: 37544
Number of extensions: 307890
Number of successful extensions: 840
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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