Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18f15
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   1.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.7  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 245 HQQYTLHYTCQRVPSRVACVFLQP*WH 165
           HQQ    Y C+R+ +R+  V     WH
Sbjct: 238 HQQIMARYNCERLCNRLGRVKRFINWH 264


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 192 CHSTRNSLTSIMQSILLVEAFRIH*E 269
           C S++NS  SIMQ   + E   ++ E
Sbjct: 623 CQSSKNSENSIMQRASMKENLNVYPE 648


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 159 PTMPLWLKKNTCHSTRNS 212
           P+MPL  +  +CH+T +S
Sbjct: 649 PSMPLLPRPISCHTTPDS 666


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -1

Query: 122 HWRICPTKDSLCPLIILLGHIWNQKRPLCNTSC 24
           H ++CPT  S    +  +  + + +RP    SC
Sbjct: 378 HSQLCPTPRSTHLKVSGINRVGSTRRPSRRNSC 410


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +2

Query: 281 ILKKPNICTYFGCVGNDEYAKLLKERAIA 367
           ++K   +   + C  ND Y  ++ E +I+
Sbjct: 221 VIKATKVLKMYACCPNDTYPMIVYEFSIS 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,674
Number of Sequences: 438
Number of extensions: 3228
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)