Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18f08
         (282 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    81   3e-17
SPCC417.02 |dad5|hsk3, hos3|DASH complex subunit Dad5|Schizosacc...    24   4.7  
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    23   8.3  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 81.0 bits (191), Expect = 3e-17
 Identities = 39/90 (43%), Positives = 51/90 (56%)
 Frame = +2

Query: 11  CPGTQSEDAGKASACAGCPNQNICASGEASQPDPAVELIKQRLSNVKHXILIXXXXXXXX 190
           CPG  SE+AG ASAC GCPNQ ICAS    + DP + L+ +RL  +KH IL+        
Sbjct: 15  CPGPSSENAGTASACEGCPNQQICASAPRGE-DPDLPLVVERLKEIKHKILVLSGKGGVG 73

Query: 191 XXXXXXXIGHGLASMSPDINVGILDXDICG 280
                  +  GL S+  D  +G++D DICG
Sbjct: 74  KSTFSSQLAWGL-SLEEDKQIGLMDVDICG 102


>SPCC417.02 |dad5|hsk3, hos3|DASH complex subunit
           Dad5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 94

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 18  ELKARMLVKLXPVLDALIKTFAHLEKHLNLT 110
           ++K+  + +L   L  L    +HLE HL++T
Sbjct: 21  QMKSFQMNRLVDQLSKLQSNMSHLENHLHVT 51


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +2

Query: 32  DAGKASACAGCPNQNICASGEASQP 106
           DA   S C  CP  +IC +     P
Sbjct: 266 DAFTESPCGNCPVSDICDANSRVNP 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,057,935
Number of Sequences: 5004
Number of extensions: 16733
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)