Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18f08
(282 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842 87 2e-18
04_04_0299 - 24243364-24244259,24244417-24244428,24245092-242451... 79 5e-16
10_08_0965 + 21915842-21916906 31 0.18
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 28 0.97
07_03_0028 + 12611734-12612522 28 0.97
01_01_0416 + 3128433-3128573,3128967-3129455 27 2.2
10_08_0285 - 16493678-16493750,16493824-16494380,16494657-164947... 27 3.0
12_02_1026 - 25478462-25479232,25479249-25479821 26 3.9
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533... 26 3.9
02_04_0254 - 21314861-21315805 26 5.2
02_04_0252 - 21305834-21306778 26 5.2
02_04_0250 - 21287782-21288726 26 5.2
02_04_0248 - 21278756-21279700 26 5.2
02_04_0246 - 21269730-21270674 26 5.2
12_02_1125 - 26327433-26328239 25 6.8
09_06_0245 - 21833622-21833901,21833988-21834059,21834152-218342... 25 6.8
09_04_0457 - 17736158-17737336 25 6.8
02_05_0358 + 28264928-28266049 25 6.8
01_06_0167 + 27152535-27152570,27152760-27152853,27153632-271537... 25 6.8
09_06_0363 - 22551848-22552915 25 9.0
>02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842
Length = 355
Score = 87.0 bits (206), Expect = 2e-18
Identities = 44/90 (48%), Positives = 53/90 (58%)
Frame = +2
Query: 11 CPGTQSEDAGKASACAGCPNQNICASGEASQPDPAVELIKQRLSNVKHXILIXXXXXXXX 190
CPGTQSE+AGKA ACAGCPNQ ICA+ PDP + I +R++ VKH IL+
Sbjct: 24 CPGTQSEEAGKADACAGCPNQQICATAPKG-PDPDLVGIVERMATVKHKILVLSGKGGVG 82
Query: 191 XXXXXXXIGHGLASMSPDINVGILDXDICG 280
+ LA M D VG+LD DICG
Sbjct: 83 KSTFSAQLSFALAEM--DCQVGLLDIDICG 110
>04_04_0299 -
24243364-24244259,24244417-24244428,24245092-24245193,
24245298-24245340
Length = 350
Score = 79.0 bits (186), Expect = 5e-16
Identities = 44/94 (46%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Frame = +2
Query: 11 CPGTQSEDAGKASACAGCPNQNICASGEASQPDPA----VELIKQRLSNVKHXILIXXXX 178
CPGTQSE AGKA ACAGCPNQ ICA+ PDP + I +R++ VKH IL+
Sbjct: 16 CPGTQSEAAGKADACAGCPNQQICATAPKG-PDPGAITHLLAIIERMNTVKHKILVLSGK 74
Query: 179 XXXXXXXXXXXIGHGLASMSPDINVGILDXDICG 280
+ LA M D VG+LD DICG
Sbjct: 75 GGVGKSTFSAQLSFALAEM--DHQVGLLDIDICG 106
>10_08_0965 + 21915842-21916906
Length = 354
Score = 30.7 bits (66), Expect = 0.18
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 219 CPISDVTVXFPTPPLPDKIRIXCFTLERRCFISSTAGSG*DASPD 85
CP+ ++ P PPLPD +R+ ++ R ++A + A P+
Sbjct: 167 CPLCRASIALPHPPLPDLLRVELGSVSSRRSNPNSAAAVASAPPE 211
>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 28.3 bits (60), Expect = 0.97
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 23 QSEDAGKASACAGCPNQNICASGEA--SQPDPAVELIKQRLSNVKH 154
Q+ D G S+ G PNQ + S +A P + +QR N H
Sbjct: 1821 QTSDVGSQSSMQGSPNQTMLTSQQAPLHSSSPLAQQQQQRYMNPSH 1866
>07_03_0028 + 12611734-12612522
Length = 262
Score = 28.3 bits (60), Expect = 0.97
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 8 DCPGTQSEDAGKASACAGCPNQNICASGEASQPDPAVELIKQRLSNV 148
D PGT S G + P + + A +S P P + + LS+V
Sbjct: 36 DSPGTSSPFRGGGGSTTPTPQRPVKAGSSSSPPPPPTTAMDKTLSSV 82
>01_01_0416 + 3128433-3128573,3128967-3129455
Length = 209
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 210 SDVTVXFPTPPLPDKIRIXCFTLERRCFISSTAGS 106
S++T P PP +++ I CFT + ++ AG+
Sbjct: 69 SEITQRTPLPPETNEVSIECFTGDAATAATTVAGN 103
>10_08_0285 -
16493678-16493750,16493824-16494380,16494657-16494798,
16495349-16495459,16495593-16496812
Length = 700
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 177 LPDKIRIXCFTLERRCFISSTAGS 106
L +KI I F + +RCF+ S AGS
Sbjct: 515 LTEKINISGFVVLKRCFMVSDAGS 538
>12_02_1026 - 25478462-25479232,25479249-25479821
Length = 447
Score = 26.2 bits (55), Expect = 3.9
Identities = 27/92 (29%), Positives = 39/92 (42%)
Frame = -2
Query: 278 RRCRHRVYLRLYQDSXMQDRAQLVMSQXFFRPPLYRTRSEXCALHWRDVVLSVLLRGQVE 99
RR RH LRL++ + R LVM L S AL R + S R V+
Sbjct: 77 RRLRHPHVLRLHEVLATRARIYLVMELATGGDLL----SRLAALPRRRLPESAARRVFVQ 132
Query: 98 MLLQMRKCFD*GIQHRXKLYQHPRFEFQGNLQ 3
++ + C G+ HR Q+ + GNL+
Sbjct: 133 LVDALSYCHARGVAHRDVKPQNVLLDGDGNLK 164
>07_03_1147 +
24349811-24350161,24351031-24351366,24353260-24353376,
24353585-24353647,24354066-24354139,24354216-24354306,
24354791-24354850,24355270-24355462,24356242-24356522,
24357435-24357536,24357664-24357774,24358410-24358475,
24358562-24358660,24358757-24358788,24359171-24359274,
24359380-24359507,24359625-24359756,24360051-24360359,
24360887-24361071,24361161-24361263,24361407-24361552,
24361748-24361827,24361901-24362103
Length = 1121
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 2 TVDCPGTQSEDAGKASACAGCPNQNICASGEASQPDPAVE 121
+V CP S + K S G + IC G S+P P E
Sbjct: 767 SVICPSMSSAKSVKVSQHTGRIHLYICVPGHDSRPRPLFE 806
>02_04_0254 - 21314861-21315805
Length = 314
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 219 CPISDVTVXFPTPPLP 172
CP+ +TV P PPLP
Sbjct: 161 CPLCRLTVVVPPPPLP 176
>02_04_0252 - 21305834-21306778
Length = 314
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 219 CPISDVTVXFPTPPLP 172
CP+ +TV P PPLP
Sbjct: 161 CPLCRLTVVVPPPPLP 176
>02_04_0250 - 21287782-21288726
Length = 314
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 219 CPISDVTVXFPTPPLP 172
CP+ +TV P PPLP
Sbjct: 161 CPLCRLTVVVPPPPLP 176
>02_04_0248 - 21278756-21279700
Length = 314
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 219 CPISDVTVXFPTPPLP 172
CP+ +TV P PPLP
Sbjct: 161 CPLCRLTVVVPPPPLP 176
>02_04_0246 - 21269730-21270674
Length = 314
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 219 CPISDVTVXFPTPPLP 172
CP+ +TV P PPLP
Sbjct: 161 CPLCRLTVVVPPPPLP 176
>12_02_1125 - 26327433-26328239
Length = 268
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 123 SSTAGSG*DASPDAQMF*LGHPAQAEALPASSL*VPG 13
SS++ +G ASPD + +G + LP +L +PG
Sbjct: 171 SSSSFTGVGASPDGSVKGVGGGGSSSPLPVGTLALPG 207
>09_06_0245 -
21833622-21833901,21833988-21834059,21834152-21834231,
21834366-21835109,21835212-21835547
Length = 503
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +2
Query: 5 VDCPGTQSEDAGKASACAGCPNQNICASGEASQPDP 112
VDCP D G ASA A + ++ E DP
Sbjct: 143 VDCPDADVGDGGAASAAAPASSSSMEEWSEIDLRDP 178
>09_04_0457 - 17736158-17737336
Length = 392
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 270 SXSSIPTFISGLXDARPCPISDVTVXFPTPPLP 172
S ++ P + L D P SDV PT P P
Sbjct: 159 SHATCPVCRANLVDGASEPASDVAAELPTAPAP 191
>02_05_0358 + 28264928-28266049
Length = 373
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 219 CPISDVTVXFPTPPLP 172
CP+ TV P PPLP
Sbjct: 187 CPLCRATVSLPHPPLP 202
>01_06_0167 +
27152535-27152570,27152760-27152853,27153632-27153738,
27153877-27153963
Length = 107
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 181 PFTGQDQNXVLYIGETLFYQFYCGVRLRCFSRCANVL 71
PFT Q N V G LF + C RC+ RC +++
Sbjct: 32 PFTCQASNAVHTGGVHLFGRLICTPSSRCY-RCIHIV 67
>09_06_0363 - 22551848-22552915
Length = 355
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 14 PGTQSEDAGKASACAGCPNQNICASGEASQPDPAV 118
PG S ++A A + + A+ AS PDP V
Sbjct: 35 PGPASSSISGSTASAASSSSSSLAAARASLPDPPV 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,656,942
Number of Sequences: 37544
Number of extensions: 134924
Number of successful extensions: 326
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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