Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18f08
(282 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80216-6|CAB02285.2| 313|Caenorhabditis elegans Hypothetical pr... 85 1e-17
AF125954-4|AAD14710.1| 337|Caenorhabditis elegans Seven tm rece... 29 0.51
AC006769-5|AAF60577.2| 339|Caenorhabditis elegans Hypothetical ... 29 0.51
Z81116-13|CAB03300.1| 245|Caenorhabditis elegans Hypothetical p... 27 2.1
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 27 2.1
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 27 2.1
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 27 2.7
AF020555-1|AAB68848.1| 173|Caenorhabditis elegans lin-22 protein. 27 2.7
AC024817-57|AAK68522.1| 173|Caenorhabditis elegans Abnormal cel... 27 2.7
AF003131-6|AAB54131.2| 166|Caenorhabditis elegans Hypothetical ... 26 3.6
AC006777-5|AAK72311.1| 247|Caenorhabditis elegans Hypothetical ... 26 4.8
AC006633-6|AAK68378.4| 578|Caenorhabditis elegans Hypothetical ... 26 4.8
Z71177-4|CAA94870.1| 529|Caenorhabditis elegans Hypothetical pr... 25 6.3
U39743-4|AAA80438.4| 581|Caenorhabditis elegans Hypothetical pr... 25 6.3
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 25 6.3
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ... 25 6.3
AC006693-2|AAF60378.2| 334|Caenorhabditis elegans Serpentine re... 25 6.3
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 25 8.4
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 25 8.4
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 25 8.4
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 25 8.4
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 25 8.4
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 25 8.4
AL117193-11|CAB55000.1| 174|Caenorhabditis elegans Hypothetical... 25 8.4
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 25 8.4
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 25 8.4
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 25 8.4
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 25 8.4
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 25 8.4
AC024876-9|AAF60887.2| 301|Caenorhabditis elegans Hypothetical ... 25 8.4
>Z80216-6|CAB02285.2| 313|Caenorhabditis elegans Hypothetical
protein F10G8.6 protein.
Length = 313
Score = 84.6 bits (200), Expect = 1e-17
Identities = 43/90 (47%), Positives = 48/90 (53%)
Frame = +2
Query: 11 CPGTQSEDAGKASACAGCPNQNICASGEASQPDPAVELIKQRLSNVKHXILIXXXXXXXX 190
CPGT S AGKAS CAGCPNQ CA+G+ PD V I+ R S +KH ILI
Sbjct: 12 CPGTGSAGAGKASGCAGCPNQGSCATGQGPPPDADVPKIQDRFSRIKHKILILSGKGGVG 71
Query: 191 XXXXXXXIGHGLASMSPDINVGILDXDICG 280
+ LAS P V ILD DICG
Sbjct: 72 KSTLTSNLARALAS-DPSKQVAILDVDICG 100
>AF125954-4|AAD14710.1| 337|Caenorhabditis elegans Seven tm
receptor protein 119 protein.
Length = 337
Score = 29.1 bits (62), Expect = 0.51
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 169 QDQNXVLYIGETLFYQFYCGVRLRCFSRCANVLIRASSTGXSFTSIL 29
+D V + +Y CGV + + +C ++LI S G S TSI+
Sbjct: 170 EDSYAVAQLSAVYYYYDKCGVLVIHWLQCFSILILYSIMGTSITSIV 216
>AC006769-5|AAF60577.2| 339|Caenorhabditis elegans Hypothetical
protein Y45G12C.10 protein.
Length = 339
Score = 29.1 bits (62), Expect = 0.51
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 169 QDQNXVLYIGETLFYQFYCGVRLRCFSRCANVLIRASSTGXSFTSIL 29
+D V + +Y CGV + + +C ++LI S G S TSI+
Sbjct: 172 EDSYAVAQLSAVYYYYDKCGVLVIHWLQCFSILILYSIMGTSITSIV 218
>Z81116-13|CAB03300.1| 245|Caenorhabditis elegans Hypothetical
protein T06C12.14 protein.
Length = 245
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -3
Query: 181 PFTGQDQNXVLYIGETLFYQFYCGVRLRCFSRCANVLIRASSTGXSFTSILALSSRA 11
P D++ +G F YC R SRCA+ SST SF S + + RA
Sbjct: 164 PDCANDRSICNAVGLQTFVNTYCQ---RTCSRCASATTTRSSTCTSFISDSSTACRA 217
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 249 FISGLXDARPCPISDVTVXFPTPPLPDKIRIXCFTLER 136
F+SG+ +A CP+ V V T DK + T R
Sbjct: 131 FLSGVCEAMLCPLERVQVLLQTTIFHDKFKNTLHTFNR 168
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 249 FISGLXDARPCPISDVTVXFPTPPLPDKIRIXCFTLER 136
F+SG+ +A CP+ V V T DK + T R
Sbjct: 40 FLSGVCEAMLCPLERVQVLLQTTIFHDKFKNTLHTFNR 77
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
protein F30H5.3 protein.
Length = 1599
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 47 SACAGCPNQNICASGEASQPDPAVELIKQRLSNVK 151
S C G N ++C GE + + A +++ L NV+
Sbjct: 875 SVCCGATNMDVCPEGEKAYVNAADMGVRECLINVE 909
>AF020555-1|AAB68848.1| 173|Caenorhabditis elegans lin-22 protein.
Length = 173
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 249 FISGLXDARPCPISDVTVXFPTPPLP-DKIR 160
++ L A+PC +S T TPP P ++IR
Sbjct: 74 YLQQLRSAQPCSLSPSTSSISTPPTPKEEIR 104
>AC024817-57|AAK68522.1| 173|Caenorhabditis elegans Abnormal cell
lineage protein 22 protein.
Length = 173
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 249 FISGLXDARPCPISDVTVXFPTPPLP-DKIR 160
++ L A+PC +S T TPP P ++IR
Sbjct: 74 YLQQLRSAQPCSLSPSTSSISTPPTPKEEIR 104
>AF003131-6|AAB54131.2| 166|Caenorhabditis elegans Hypothetical
protein C09D1.2 protein.
Length = 166
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Frame = -2
Query: 179 LYRTRSEXCALHW-----RDVVLSVLLRGQVEMLLQMRKCFD*GIQHR 51
L+R S+ C HW + + + +L KCFD G +HR
Sbjct: 17 LHRPYSKHCPKHWVYNKETQACYRTISKTNMTILEADNKCFDYGFEHR 64
>AC006777-5|AAK72311.1| 247|Caenorhabditis elegans Hypothetical
protein Y46H3D.8 protein.
Length = 247
Score = 25.8 bits (54), Expect = 4.8
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = -3
Query: 145 IGETLFYQFYCGVRLRCFSRCANVLIRASSTGXSFTSILALSSRAIYS 2
+G F YC + C SRCA+ ASS+ S TS A SS A S
Sbjct: 175 VGLQDFVNTYC--QKTC-SRCASSTTTASSSSSSCTSYTADSSSACAS 219
>AC006633-6|AAK68378.4| 578|Caenorhabditis elegans Hypothetical
protein F35B3.7 protein.
Length = 578
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 56 AGCPNQNICASGEASQPDPAVELIKQRLSNVKHXI 160
AGCPN ++ ++ E V+ ++Q ++N+K +
Sbjct: 535 AGCPNCSVASNIEEKDLRREVQDLRQEVANLKQVV 569
>Z71177-4|CAA94870.1| 529|Caenorhabditis elegans Hypothetical
protein AC3.7 protein.
Length = 529
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 198 VXFPTPPLPDKIRIXCFTLE 139
+ FPTP LP + I FT++
Sbjct: 259 IAFPTPSLPKHVHIGGFTID 278
>U39743-4|AAA80438.4| 581|Caenorhabditis elegans Hypothetical
protein R173.3 protein.
Length = 581
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 82 ANVLIRASSTGXSFTSILALSSRA 11
+N+L+ TG + S+LALS RA
Sbjct: 211 SNILLMGHGTGAASASLLALSPRA 234
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 32 DAGKASACA-GCPNQNICASGEASQPDPAVELIKQRLSNVKHXILI 166
DAG+ S C+ G I GEAS ++E++KQ + K L+
Sbjct: 4205 DAGRVSVCSFGADVNTIIPFGEAS-ASSSIEMLKQMTFSQKKTDLL 4249
>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
protein Y55F3BR.2 protein.
Length = 1594
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +2
Query: 53 CAGCPNQNICASGEASQPDPAVELIKQ 133
C G Q +C SGE + DP +Q
Sbjct: 905 CCGSDGQGVCPSGEKAFMDPRTNSPRQ 931
>AC006693-2|AAF60378.2| 334|Caenorhabditis elegans Serpentine
receptor, class h protein271 protein.
Length = 334
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -3
Query: 154 VLYIGETLFYQFYCGVRLRCFSR 86
+ I E LF+ FY ++++C +R
Sbjct: 199 IFIISEILFFIFYVKIQMKCLAR 221
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 14 PGTQSEDAGKASACAGCPNQNICASGEASQPDP 112
PGT+ + G SACA G + QP P
Sbjct: 525 PGTKGDRGGTCSACAPGTKGEKGLPGYSGQPGP 557
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 14 PGTQSEDAGKASACAGCPNQNICASGEASQPDP 112
PGT+ + G SACA G + QP P
Sbjct: 524 PGTKGDRGGTCSACAPGTKGEKGLPGYSGQPGP 556
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 14 PGTQSEDAGKASACAGCPNQNICASGEASQPDP 112
PGT+ + G SACA G + QP P
Sbjct: 524 PGTKGDRGGTCSACAPGTKGEKGLPGYSGQPGP 556
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 14 PGTQSEDAGKASACAGCPNQNICASGEASQPDP 112
PGT+ + G SACA G + QP P
Sbjct: 525 PGTKGDRGGTCSACAPGTKGEKGLPGYSGQPGP 557
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 161 EXCALHWRDVVLSVLLRGQVEMLLQMRKCFD 69
E AL RD V LLR + E + +R C D
Sbjct: 146 EQAALVKRDQVYHELLRSEEEFVSSLRTCVD 176
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 14 PGTQSEDAGKASACAGCPNQNICASGEASQPDP 112
PGT+ + G SACA G + QP P
Sbjct: 561 PGTKGDRGGTCSACAPGTKGEKGLPGYSGQPGP 593
>AL117193-11|CAB55000.1| 174|Caenorhabditis elegans Hypothetical
protein Y105C5A.22 protein.
Length = 174
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -2
Query: 281 GRRCRHRVYLRLYQDSXMQDRAQLVMSQXFFRPPLYRTRSE 159
GRR R +R + DR Q S +PP+YR RSE
Sbjct: 118 GRRKERRKKMRKIGRNFSHDRQQSSTSLSA-QPPVYRRRSE 157
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 161 EXCALHWRDVVLSVLLRGQVEMLLQMRKCFD 69
E AL RD V LLR + E + +R C D
Sbjct: 146 EQAALVKRDQVYHELLRSEEEFVSSLRTCVD 176
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 161 EXCALHWRDVVLSVLLRGQVEMLLQMRKCFD 69
E AL RD V LLR + E + +R C D
Sbjct: 146 EQAALVKRDQVYHELLRSEEEFVSSLRTCVD 176
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 161 EXCALHWRDVVLSVLLRGQVEMLLQMRKCFD 69
E AL RD V LLR + E + +R C D
Sbjct: 146 EQAALVKRDQVYHELLRSEEEFVSSLRTCVD 176
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 161 EXCALHWRDVVLSVLLRGQVEMLLQMRKCFD 69
E AL RD V LLR + E + +R C D
Sbjct: 146 EQAALVKRDQVYHELLRSEEEFVSSLRTCVD 176
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 161 EXCALHWRDVVLSVLLRGQVEMLLQMRKCFD 69
E AL RD V LLR + E + +R C D
Sbjct: 146 EQAALVKRDQVYHELLRSEEEFVSSLRTCVD 176
>AC024876-9|AAF60887.2| 301|Caenorhabditis elegans Hypothetical
protein Y94H6A.9a protein.
Length = 301
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 8 DCPGTQSEDAGKASACAGCPNQNICASGEASQ 103
D G S+D+G +A G P + SG+A Q
Sbjct: 15 DDGGPDSDDSGADAAERGAPQEFYAGSGQAVQ 46
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,094,210
Number of Sequences: 27780
Number of extensions: 102983
Number of successful extensions: 269
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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