Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18f08
         (282 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   2.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   2.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   2.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   5.0  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               20   6.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    20   6.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   8.8  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    19   8.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    19   8.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 68  NQNICASGEASQPDPAVELIKQRLSN 145
           + ++  S EAS+   AVE I + L N
Sbjct: 435 SDSVLLSPEASKATEAVEFIAEHLRN 460


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 154 VLYIGETLFYQFYCGVR 104
           VL I + L    YCG+R
Sbjct: 675 VLLISDRLSRDLYCGIR 691


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 154 VLYIGETLFYQFYCGVR 104
           VL I + L    YCG+R
Sbjct: 713 VLLISDRLSRDLYCGIR 729


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 101 QPDPAVELIKQRLSNVKHXIL 163
           QP+P +ELI+  +  + + IL
Sbjct: 491 QPEPLIELIEHWMPLLPNWIL 511


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 119 LLRGQVEMLLQMRKCFD*GIQHRXKLYQHPRFE 21
           LL  + E +L+ R C +  + HR  L     F+
Sbjct: 41  LLEDESERMLRKRGCIEACLFHRLALMNDNVFD 73


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
          protein-1 protein.
          Length = 128

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +2

Query: 11 CPGTQSEDAGKASACAGC 64
          C G  S   G  S C GC
Sbjct: 22 CSGYPSIRQGTTSYCLGC 39


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 6/14 (42%), Positives = 7/14 (50%)
 Frame = -3

Query: 124 QFYCGVRLRCFSRC 83
           QF C     CF+ C
Sbjct: 734 QFLCRYEAHCFALC 747


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
          protein.
          Length = 139

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +1

Query: 46 FXLCWMP 66
          F LCW+P
Sbjct: 18 FILCWLP 24


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +1

Query: 46  FXLCWMP 66
           F LCW+P
Sbjct: 466 FILCWLP 472


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,006
Number of Sequences: 438
Number of extensions: 1335
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5494764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)