Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18f07
         (234 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   1.3  
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    25   1.8  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          24   2.3  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    23   5.4  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    23   5.4  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    23   5.4  
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce...    23   5.4  
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    22   9.4  
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    22   9.4  

>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 126 TSPVLDIAPGSDLFCFIWN*NA 191
           T P+  + P  ++FC IW+ NA
Sbjct: 411 THPLRSVIPLDNIFCNIWSDNA 432


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 226 LHRIDKFIKNLNAF*FQIKQKRSDPGAMSRTG 131
           LH+I KF  +L +    + +++    AMSR G
Sbjct: 119 LHQIKKFSSDLQSLKSSMGERQKQQAAMSRRG 150


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 121 HHLMAWGLPWQQQSTVTQC 65
           H ++ WG  W++  T  +C
Sbjct: 160 HGVIGWGATWEKSKTQMEC 178


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 150 ERCRERVMFSITSWRGGYHGSSSQ 79
           E  R+RV FS+TS  G     SSQ
Sbjct: 77  EESRKRVSFSLTSNDGAKSDRSSQ 100


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = -3

Query: 229 FLHRIDKFIKNLNA 188
           +LH++D+FI+NL +
Sbjct: 435 YLHQLDEFIENLKS 448


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 140 ENG*CLASPHGVGATMAAAVNCDTM 66
           ENG  L  P G GA +A A  C  +
Sbjct: 168 ENGTKLPCPDGYGAFLATACVCSLL 192


>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 395

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 57  GRQHCVTVDCCCHGSPHAM 113
           G  HC +V C   G P  M
Sbjct: 14  GESHCKSVGCIVEGCPPGM 32


>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 168 RKGPILERCRERVMFSITSWRGGYHGSSSQL 76
           +K PI  + R+R  + + +  G Y G+S  +
Sbjct: 216 QKNPITLKIRDRPFYYLLNANGKYAGNSKDV 246


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 3   NSGRKHSRCCTSILRKFSGRQHCVTVDCCCHGSP 104
           NSG + +       RKF+G++  + +    HG P
Sbjct: 133 NSGTEANITAIIAARKFTGKRAVIAMHGGYHGGP 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 949,095
Number of Sequences: 5004
Number of extensions: 15545
Number of successful extensions: 27
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)