Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18f06
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    29   0.85 
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    28   1.5  
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|...    27   3.4  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    26   6.0  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   7.9  

>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +1

Query: 397 EPLKGLYAGVQ----HSPVRVLVNHKAPIYLPLWHSSK 498
           EP + L   +Q    HS +  L +  AP  LP WHSSK
Sbjct: 334 EPFQPLQLDIQAEDIHSVIDALEHMTAPEILPEWHSSK 371


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 37  FFLSFI*IQNWIENIDELIYESLRNYENF 123
           F L  I +++W +N+D +    ++NY +F
Sbjct: 191 FMLGSIPLKSWAQNVDPIFQSWVKNYHSF 219


>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 16  ILTSLKLFFLSFI*IQNWIENIDELIYESLRNYENFVS 129
           +L +L + +L F   + WI ++D ++  S   YEN +S
Sbjct: 108 LLNALAVDYLKFTPSKAWIIHVDAVVILSSSPYENILS 145


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 1   ENQTKILTSLKLFFLSFI*IQNWIENIDELIYESLRN 111
           +  TKI+T++     ++    NW+EN+ + I   + N
Sbjct: 390 DTPTKIITNINKLKRNYTITNNWLENLQQKIPSEVDN 426


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 508 PVKLWGIEVVSGNAVNWLECVARGQQVTLKPIG 606
           P K W  E  +G A  W+E + +   ++L P G
Sbjct: 545 PTKSWSFEDPNGPASAWVELLDKASSISL-PFG 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,084
Number of Sequences: 5004
Number of extensions: 59260
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)