Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18f06
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0231 - 28547468-28547636,28547767-28547839,28548382-285484...    29   3.6  
05_07_0191 - 28303642-28303952,28304044-28304149,28304926-28305654     29   4.7  
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769...    28   6.2  
01_06_1623 - 38716606-38717424                                         28   6.2  

>05_07_0231 -
           28547468-28547636,28547767-28547839,28548382-28548463,
           28548880-28548970,28549042-28549118,28549493-28549534,
           28550101-28550108,28550404-28550534,28551358-28551385,
           28551580-28551689,28551843-28551988,28552670-28552711,
           28552824-28552832,28552888-28553032,28553596-28553687
          Length = 414

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 583 QVTLKPIGRDNDDLVSTVLLHLPQP 657
           +V LKP+   + DL++TVLL LP P
Sbjct: 63  RVMLKPLEDPHVDLIATVLLQLPLP 87


>05_07_0191 - 28303642-28303952,28304044-28304149,28304926-28305654
          Length = 381

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 469 IYLPLWHSSKPPLPVKLWGIEVVSGNAVNWLECVARGQQVTLKPIG 606
           + LPL    KP  P +L  +E   G  +NW      G   T + IG
Sbjct: 234 VALPLSTDHKPDRPDELERVEAAGGRVINWNGYRVLGVLATSRSIG 279


>12_01_0831 -
           7688342-7688772,7690678-7692610,7693142-7693915,
           7694019-7694142,7696084-7696189,7696346-7696532
          Length = 1184

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 600 WL*CHLLAPSNTFQP-IDCIPTNYFNSPQLN 511
           WL  H  AP+N F+P +  +PT  FN+ + N
Sbjct: 395 WLMDHRKAPNNMFRPLLSSVPTTTFNAGKGN 425


>01_06_1623 - 38716606-38717424
          Length = 272

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 415 YAGVQHSPVRVLVNHKAPIYLP 480
           YA    SPVR++VN+K+P  +P
Sbjct: 196 YAAPDMSPVRIVVNNKSPSEIP 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,976,841
Number of Sequences: 37544
Number of extensions: 340899
Number of successful extensions: 680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)