Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18f06
         (701 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF115515-1|AAO06952.1|  277|Homo sapiens MSTP052 protein.              36   0.11 
BC064898-1|AAH64898.1|  294|Homo sapiens C3orf33 protein protein.      36   0.14 
BC042198-1|AAH42198.1|  293|Homo sapiens C3orf33 protein protein.      36   0.14 
AK055701-1|BAB70989.1|  251|Homo sapiens protein ( Homo sapiens ...    36   0.19 

>AF115515-1|AAO06952.1|  277|Homo sapiens MSTP052 protein.
          Length = 277

 Score = 36.3 bits (80), Expect = 0.11
 Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
 Frame = +1

Query: 337 R*VSKFSKASKVPDHFIRNHEPLKGLYAGVQHSPVRV-LVNHKAPIYLPLWHSSKPPLPV 513
           R  SKF+ +S +P  FIR +  L+G    +  + + +  +    PI   L    +  L V
Sbjct: 40  RLTSKFTSSSDIPVEFIRRNVKLRGRLRRITENGLEIEHIPITLPIIASLRKEPRGALLV 99

Query: 514 KLWGIEVV-SGNAVNWLECVARGQQVT-LKPIGRDNDDLVSTVLLH 645
           KL G+E+  +G A  WL+   +  Q+  ++ +G++N  L   +L++
Sbjct: 100 KLAGVELAETGKA--WLQKELKPSQLLWVQLLGKENSALFCYLLVN 143


>BC064898-1|AAH64898.1|  294|Homo sapiens C3orf33 protein protein.
          Length = 294

 Score = 35.9 bits (79), Expect = 0.14
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
 Frame = +1

Query: 337 R*VSKFSKASKVPDHFIRNHEPLKGLYAGVQHSPVRV-LVNHKAPIYLPLWHSSKPPLPV 513
           R  SKF+ +S +P  FIR +  L+G    +  + + +  +    PI   L    +  L V
Sbjct: 57  RLTSKFTSSSDIPVEFIRRNVKLRGRLRRITENGLEIEHIPITLPIIASLRKEPRGALLV 116

Query: 514 KLWGIEVV-SGNAVNWLECVARGQQVT-LKPIGRDNDDLVSTVLLH 645
           KL G+E+  +G A  WL+   +  Q+   + +G++N  L   +L++
Sbjct: 117 KLAGVELAETGKA--WLQKELKPSQLLWFQLLGKENSALFCYLLVN 160


>BC042198-1|AAH42198.1|  293|Homo sapiens C3orf33 protein protein.
          Length = 293

 Score = 35.9 bits (79), Expect = 0.14
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
 Frame = +1

Query: 337 R*VSKFSKASKVPDHFIRNHEPLKGLYAGVQHSPVRV-LVNHKAPIYLPLWHSSKPPLPV 513
           R  SKF+ +S +P  FIR +  L+G    +  + + +  +    PI   L    +  L V
Sbjct: 56  RLTSKFTSSSDIPVEFIRRNVKLRGRLRRITENGLEIEHIPITLPIIASLRKEPRGALLV 115

Query: 514 KLWGIEVV-SGNAVNWLECVARGQQVT-LKPIGRDNDDLVSTVLLH 645
           KL G+E+  +G A  WL+   +  Q+   + +G++N  L   +L++
Sbjct: 116 KLAGVELAETGKA--WLQKELKPSQLLWFQLLGKENSALFCYLLVN 159


>AK055701-1|BAB70989.1|  251|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31139 fis, clone IMR322001185. ).
          Length = 251

 Score = 35.5 bits (78), Expect = 0.19
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
 Frame = +1

Query: 337 R*VSKFSKASKVPDHFIRNHEPLKGLYAGVQHSPVRV-LVNHKAPIYLPLWHSSKPPLPV 513
           R  SKF+ +S +P  FIR +  L+G    +  + + +  +    PI   L    +  L V
Sbjct: 14  RLTSKFTSSSDIPVEFIRRNVKLRGRLRRITENGLEIEHIPITLPIIASLRKEPRGALLV 73

Query: 514 KLWGIEVV-SGNAVNWLECVARGQQVT-LKPIGRDNDDLVSTVLL 642
           KL G+E+  +G A  WL+   +  Q+   + +G++N  L   +L+
Sbjct: 74  KLAGVELAETGKA--WLQKELKPSQLLWFQLLGKENSALFCYLLV 116


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,991,025
Number of Sequences: 237096
Number of extensions: 2001328
Number of successful extensions: 3053
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3053
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)