Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18f06
         (701 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060312-1|AAL25351.1|  239|Drosophila melanogaster GH17623p pro...    50   4e-06
AE013599-272|AAS64795.1|  239|Drosophila melanogaster CG30159-PB...    50   4e-06
AE013599-271|AAM70842.1|  239|Drosophila melanogaster CG30159-PA...    50   4e-06

>AY060312-1|AAL25351.1|  239|Drosophila melanogaster GH17623p
           protein.
          Length = 239

 Score = 49.6 bits (113), Expect = 4e-06
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 5/161 (3%)
 Frame = +1

Query: 187 LQQDYRGVNIAVYALATAGLAISVHKIRPVSICLKNPXXXXXXXXXXXXXR*VSKFSKAS 366
           L++D RG  +A+Y  +   LA++  K +P  +                    V +F + S
Sbjct: 19  LERDTRGSELAIYGTSAIMLAVAYAKRKPAYL--------------------VRQFKQPS 58

Query: 367 KVPDHFIRNHEPLKGLYAGV--QHSPVRVLVNHKAPIYLPLWHSSKPPLPVKLWGIEVVS 540
            +P+  I       G  AGV  Q     +++ H+ P++ P++ SSK  LPVKL G+  V+
Sbjct: 59  HIPERLINERVMHTGKIAGVKQQEQDTLLMIQHR-PLF-PIFTSSKRLLPVKLPGVR-VN 115

Query: 541 GNAVNWLECVARGQQVTLKPI--GRDNDDLVSTV-LLHLPQ 654
            N  +WL+    G++ T  P+   +  D +V  + L+H P+
Sbjct: 116 ANGYSWLQQCLIGREATFLPLKSAKGQDFVVCQLCLVHPPR 156


>AE013599-272|AAS64795.1|  239|Drosophila melanogaster CG30159-PB,
           isoform B protein.
          Length = 239

 Score = 49.6 bits (113), Expect = 4e-06
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 5/161 (3%)
 Frame = +1

Query: 187 LQQDYRGVNIAVYALATAGLAISVHKIRPVSICLKNPXXXXXXXXXXXXXR*VSKFSKAS 366
           L++D RG  +A+Y  +   LA++  K +P  +                    V +F + S
Sbjct: 19  LERDTRGSELAIYGTSAIMLAVAYAKRKPAYL--------------------VRQFKQPS 58

Query: 367 KVPDHFIRNHEPLKGLYAGV--QHSPVRVLVNHKAPIYLPLWHSSKPPLPVKLWGIEVVS 540
            +P+  I       G  AGV  Q     +++ H+ P++ P++ SSK  LPVKL G+  V+
Sbjct: 59  HIPERLINERVMHTGKIAGVKQQEQDTLLMIQHR-PLF-PIFTSSKRLLPVKLPGVR-VN 115

Query: 541 GNAVNWLECVARGQQVTLKPI--GRDNDDLVSTV-LLHLPQ 654
            N  +WL+    G++ T  P+   +  D +V  + L+H P+
Sbjct: 116 ANGYSWLQQCLIGREATFLPLKSAKGQDFVVCQLCLVHPPR 156


>AE013599-271|AAM70842.1|  239|Drosophila melanogaster CG30159-PA,
           isoform A protein.
          Length = 239

 Score = 49.6 bits (113), Expect = 4e-06
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 5/161 (3%)
 Frame = +1

Query: 187 LQQDYRGVNIAVYALATAGLAISVHKIRPVSICLKNPXXXXXXXXXXXXXR*VSKFSKAS 366
           L++D RG  +A+Y  +   LA++  K +P  +                    V +F + S
Sbjct: 19  LERDTRGSELAIYGTSAIMLAVAYAKRKPAYL--------------------VRQFKQPS 58

Query: 367 KVPDHFIRNHEPLKGLYAGV--QHSPVRVLVNHKAPIYLPLWHSSKPPLPVKLWGIEVVS 540
            +P+  I       G  AGV  Q     +++ H+ P++ P++ SSK  LPVKL G+  V+
Sbjct: 59  HIPERLINERVMHTGKIAGVKQQEQDTLLMIQHR-PLF-PIFTSSKRLLPVKLPGVR-VN 115

Query: 541 GNAVNWLECVARGQQVTLKPI--GRDNDDLVSTV-LLHLPQ 654
            N  +WL+    G++ T  P+   +  D +V  + L+H P+
Sbjct: 116 ANGYSWLQQCLIGREATFLPLKSAKGQDFVVCQLCLVHPPR 156


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,190,965
Number of Sequences: 53049
Number of extensions: 604821
Number of successful extensions: 1388
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3087795150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)