Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18f06
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-1|CAB04334.1|  329|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z74034-2|CAE17843.1|  323|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z81533-1|CAB04334.1|  329|Caenorhabditis elegans Hypothetical
           protein F36G9.2 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 341 RLASFRKPVKFQIISSEIMNL*KDYMLECNIHQFVFWSITK--PQYIYRY 484
           R  +  K VKF +I+  +  +  DY L   I  F+ W I    P  I++Y
Sbjct: 42  RTPNSMKTVKFSLINLHLWTILLDYALSLFIIPFIMWPIMGGIPLGIFQY 91


>Z74034-2|CAE17843.1|  323|Caenorhabditis elegans Hypothetical
           protein F43A11.4 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +1

Query: 403 LKGLYAGVQHSPVRVLVNHKAPIYLPLWHSS 495
           +  LYAG+Q+    + +N    +Y+P+++S+
Sbjct: 92  VNSLYAGLQYCGFLIAINRFCAMYIPMFYST 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,350,896
Number of Sequences: 27780
Number of extensions: 321003
Number of successful extensions: 687
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)