Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18f04
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1023 - 7996240-7996369,7997166-7997260,7997430-7997515,799...    28   6.3  
02_05_0441 + 29040250-29040524,29040656-29040772,29040834-290411...    28   6.3  
11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094...    27   8.4  
06_01_0610 - 4415080-4415461,4415872-4416851                           27   8.4  

>06_01_1023 -
           7996240-7996369,7997166-7997260,7997430-7997515,
           7998034-7998184
          Length = 153

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 261 FPKDFACPMTAIAGPALINPSRTLRPTFSIFLKSFHLG 148
           F +DFA P+ A  GP   +P     P  SI++K+ + G
Sbjct: 61  FARDFAAPVHAGLGPK-TSPKDAPLPHLSIYIKNIYKG 97


>02_05_0441 +
           29040250-29040524,29040656-29040772,29040834-29041143,
           29041863-29042018,29042332-29042483,29042783-29042936,
           29043897-29043998,29044168-29044209
          Length = 435

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 228 IAGPALINPSRTLRPTFSIFLKSFHLGSGAALTA 127
           I GPA+++    L+P  S  L  F LGS   L +
Sbjct: 304 ILGPAMVSLYMPLQPVVSALLSKFFLGSSVYLAS 337


>11_06_0711 -
           26508228-26508488,26508970-26509084,26509179-26509451,
           26509629-26510197,26510489-26510597,26511002-26511544,
           26511645-26511763,26511893-26512120,26512199-26512315,
           26512410-26512506,26513169-26513569
          Length = 943

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 102 SSRWCWLSARSALLLSPGGNSSRKLRKWDATF 197
           SS + WL   ++ L  P G+S+RK  +W   F
Sbjct: 779 SSYFSWLDPSTSNLQLPNGDSTRKAFRWPIGF 810


>06_01_0610 - 4415080-4415461,4415872-4416851
          Length = 453

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 441 WYVKYY*YNRGT 406
           WY+ YY YNRGT
Sbjct: 435 WYLSYYGYNRGT 446


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,947,326
Number of Sequences: 37544
Number of extensions: 232631
Number of successful extensions: 451
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)