Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18f01
(209 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 0.26
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 26 0.78
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo... 23 4.2
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 23 7.3
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 23 7.3
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 23 7.3
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 22 9.6
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc... 22 9.6
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos... 22 9.6
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 22 9.6
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 22 9.6
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 27.5 bits (58), Expect = 0.26
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 189 IFITVLVLRQSARNTDTHTCPRIHSGITTYVFNHINI 79
IFI++ +LR+ N + R+ + I T V H+++
Sbjct: 289 IFISIAILREGFDNYRRYRQDRVENRIQTQVLRHVDV 325
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.8 bits (54), Expect = 0.78
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 138 HTCPRIHSGITTYVFNHINIYTASICTTVCVS 43
H + S + TY FN AS+ T +C+S
Sbjct: 1274 HLVLELWSDVLTYAFNEEKTIRASLPTLICLS 1305
>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 188 FLLPS*Y*DKVPVTRTHIHALEY 120
F LP + + VP+ R HIH +
Sbjct: 251 FSLPKLFFEGVPIKRLHIHVRRF 273
>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/29 (27%), Positives = 15/29 (51%)
Frame = -1
Query: 161 KVPVTRTHIHALEYIQVLRHTSLTI*ISI 75
K+P TR H+ L Y + H + + + +
Sbjct: 16 KLPTTRLHMDTLYYYYFVSHLAAALFVDL 44
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = -1
Query: 158 VPVTRTHIHALEYIQVLRHTSLTI*ISIQHLYV 60
+ +T ++L +++++H SL I QH +V
Sbjct: 360 IKLTSLDTYSLLVLEIMKHPSLLISAISQHFWV 392
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/37 (24%), Positives = 17/37 (45%)
Frame = -3
Query: 147 TDTHTCPRIHSGITTYVFNHINIYTASICTTVCVSDG 37
+D T +H +++ + NH + + C V DG
Sbjct: 450 SDDRTAHTVHEKVSSAISNHSALSSQPTCVIVDEIDG 486
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 22.2 bits (45), Expect = 9.6
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = +1
Query: 49 TYCCTYRCCI 78
+Y CT+ CCI
Sbjct: 492 SYLCTFTCCI 501
>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 302
Score = 22.2 bits (45), Expect = 9.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 128 GHVCVSVLRALCLNTKTVIKIVSFKKK 208
GHVC+SV +K + + FKKK
Sbjct: 250 GHVCISVDNINAACSKFEAEGLPFKKK 276
>SPCC645.11c |mug117||meiotically upregulated gene
Mug117|Schizosaccharomyces pombe|chr 3|||Manual
Length = 186
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 144 DTHTCPRIHSGIT-TYVFNHINIYTASICTTVCVSDG 37
+ CP + + +++ + YTAS CT + +G
Sbjct: 82 ENRACPNAYMKYNRSLIYHGYSSYTASSCTAIYECEG 118
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 80 IFIWLKTYVVIPECILG 130
+FI + YV+IP +LG
Sbjct: 563 LFILIGCYVIIPTALLG 579
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +3
Query: 6 RLANQIITKRIHPT 47
R AN+++ +IHPT
Sbjct: 107 RRANELVKNKIHPT 120
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 826,369
Number of Sequences: 5004
Number of extensions: 13404
Number of successful extensions: 28
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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