Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18f01
         (209 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0355 + 28249774-28249980,28250068-28250131,28250230-282502...    25   6.3  
04_04_0582 + 26369537-26369914,26371598-26371887,26371985-263721...    25   8.4  

>02_05_0355 +
           28249774-28249980,28250068-28250131,28250230-28250273,
           28250377-28250624,28250712-28250883
          Length = 244

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 180 TVLVLRQSARNTDTHTCPRIHSGITTYVFNHINIYTAS 67
           T++V   SA+NT T     +    T +V N+I+   AS
Sbjct: 35  TIIVWNNSAKNTGTFYSATVDVFATGFVTNNISFKNAS 72


>04_04_0582 +
           26369537-26369914,26371598-26371887,26371985-26372156,
           26372271-26372393,26372499-26372627,26372785-26372979,
           26373128-26373214,26373296-26373568,26374166-26374273,
           26374363-26374686
          Length = 692

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 207 FFLNDTIF-ITVLVLRQSARNTDTHTCPRIHSGITTYVFNHINIYTA 70
           F +++TI  +  LVL      T  +   R+H G + Y+F  +N+Y +
Sbjct: 474 FVISNTISALPFLVLICFLSGTICYFMVRLHPGFSHYIFFVLNLYAS 520


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,068,785
Number of Sequences: 37544
Number of extensions: 79602
Number of successful extensions: 158
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 14,793,348
effective HSP length: 49
effective length of database: 12,953,692
effective search space used: 259073840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)