Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18f01
         (209 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens ...    33   0.13 
AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens ...    31   0.51 
AJ347202-1|CAC87248.1|   83|Homo sapiens immunoglobulin heavy ch...    30   1.6  
AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens ...    29   3.6  
AK022609-1|BAB14128.1|  307|Homo sapiens protein ( Homo sapiens ...    27   8.3  

>AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45698 fis, clone FEBRA2017811. ).
          Length = 415

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 150 NTDTHTCPRIHSGITTYVFNHIN 82
           +TDTHTC  IHS I T+   HI+
Sbjct: 16  HTDTHTCTHIHSHIHTFTCTHIH 38


>AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42815 fis, clone BRCAN2014143. ).
          Length = 189

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 141 THTCPRIHSGITTYVFNHINIYTASICTTVCV 46
           TH C R+H     YV  +I+I    +C  VCV
Sbjct: 59  THICMRVHVYAYMYVRTYIHIMCMHVCVYVCV 90


>AJ347202-1|CAC87248.1|   83|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 83

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -3

Query: 195 DTIFITVLVLRQSARNTDT--HTCPRIHSGITTYVFNHINIY 76
           DT   TV +  +S R+ DT  + C R+  G+T+Y +N ++++
Sbjct: 42  DTSTSTVYMELRSLRSDDTAVYYCARLGGGVTSYYYNGMDVW 83


>AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46559 fis, clone THYMU3040126. ).
          Length = 303

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 46  HTYCCTYRCC-IDIYMVKDVCRNT*MYSRACMCV 144
           HTY C   C    IY+   VC  T +Y+  C+CV
Sbjct: 78  HTYTCICVCVHTHIYIHMCVCVYTRIYTYTCVCV 111


>AK022609-1|BAB14128.1|  307|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12547 fis, clone NT2RM4000634. ).
          Length = 307

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 86  IWLKTYVVIPECILGHVCVSVLRALCL 166
           +W+   V +P C+  H+CV V   +C+
Sbjct: 7   VWVHICVCVPVCVGAHLCVWVHICVCV 33


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,310,076
Number of Sequences: 237096
Number of extensions: 488746
Number of successful extensions: 962
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 76,859,062
effective HSP length: 48
effective length of database: 65,478,454
effective search space used: 1375047534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)