Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18f01
         (209 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098992-7|AAC67455.2|  224|Caenorhabditis elegans Hypothetical ...    25   5.6  
U41510-4|AAL11105.1|  371|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U41510-3|AAM69076.1|  411|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AC199167-2|ABO33246.1|  222|Caenorhabditis elegans Hypothetical ...    25   9.7  
AC199167-1|ABO33247.1|  233|Caenorhabditis elegans Hypothetical ...    25   9.7  

>AF098992-7|AAC67455.2|  224|Caenorhabditis elegans Hypothetical
           protein F53C3.4 protein.
          Length = 224

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +1

Query: 34  GSIRHTYCCTYRCCIDIYMVKD 99
           G   +TYCC   CC  +  +++
Sbjct: 127 GCAEYTYCCGLECCTGLSQLEE 148


>U41510-4|AAL11105.1|  371|Caenorhabditis elegans Hypothetical
           protein ZC449.3a protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 104 VVIPECILGHVCVSVLRAL 160
           V IPE ILG V V+ +RAL
Sbjct: 173 VEIPEQILGAVAVATIRAL 191


>U41510-3|AAM69076.1|  411|Caenorhabditis elegans Hypothetical
           protein ZC449.3b protein.
          Length = 411

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 104 VVIPECILGHVCVSVLRAL 160
           V IPE ILG V V+ +RAL
Sbjct: 213 VEIPEQILGAVAVATIRAL 231


>AC199167-2|ABO33246.1|  222|Caenorhabditis elegans Hypothetical
           protein cTel55X.1a protein.
          Length = 222

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 150 NTDTHTCPRIHSGITTYVFNHINIYTASICTTVCV 46
           N   HT P I + +   ++NH +  T++I   + V
Sbjct: 119 NHGLHTLPAITAHLDLAIYNHTSFSTSAILKGIAV 153


>AC199167-1|ABO33247.1|  233|Caenorhabditis elegans Hypothetical
           protein cTel55X.1b protein.
          Length = 233

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 150 NTDTHTCPRIHSGITTYVFNHINIYTASICTTVCV 46
           N   HT P I + +   ++NH +  T++I   + V
Sbjct: 119 NHGLHTLPAITAHLDLAIYNHTSFSTSAILKGIAV 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,638,831
Number of Sequences: 27780
Number of extensions: 80027
Number of successful extensions: 177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)