Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18f01
(209 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 25 0.13
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 0.52
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 1.6
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 1.6
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 20 3.7
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 20 3.7
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 19 4.9
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 19 4.9
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 19 4.9
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 19 4.9
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 19 6.4
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 19 6.4
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 19 6.4
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 19 6.4
AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter... 19 8.5
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 24.6 bits (51), Expect = 0.13
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 207 FFLNDTIFITVLVLRQSARNTDTH 136
F + ++ T+L+L RN DTH
Sbjct: 303 FMVASSVVSTILILNYHHRNADTH 326
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 22.6 bits (46), Expect = 0.52
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 207 FFLND-TIFITVLVLRQSARNTDTHTCPRI 121
F +N +I +TV+++ + R TH P++
Sbjct: 304 FIMNTVSILVTVIIINWNFRGPRTHRMPQL 333
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.0 bits (42), Expect = 1.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 118 FRYYDIRL*PYKYLYSIYMYNSMCVGW 38
F + I+ P KYL Y + S +GW
Sbjct: 507 FTFNIIKFVPVKYLTYEYPWWSHVLGW 533
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.0 bits (42), Expect = 1.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 118 FRYYDIRL*PYKYLYSIYMYNSMCVGW 38
F + I+ P KYL Y + S +GW
Sbjct: 560 FTFNIIKFVPVKYLTYEYPWWSHVLGW 586
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 19.8 bits (39), Expect = 3.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 207 FFLNDTIFITVLVLRQSAR 151
FFL +FI VL +R R
Sbjct: 213 FFLIPMVFIAVLYIRIGLR 231
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 19.8 bits (39), Expect = 3.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 192 TIFITVLVLRQSARNTDTH 136
+I+ITV VL R+ TH
Sbjct: 326 SIWITVCVLNVHFRSPSTH 344
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 19.4 bits (38), Expect = 4.9
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -2
Query: 88 YKYLYSIYMYNSMC 47
YKY Y+ YN+ C
Sbjct: 96 YKYNYNNNNYNNNC 109
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 19.4 bits (38), Expect = 4.9
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -2
Query: 88 YKYLYSIYMYNSMC 47
YKY Y+ YN+ C
Sbjct: 96 YKYNYNNNNYNNNC 109
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 19.4 bits (38), Expect = 4.9
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -2
Query: 88 YKYLYSIYMYNSMC 47
YKY Y+ YN+ C
Sbjct: 96 YKYNYNNNNYNNNC 109
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 19.4 bits (38), Expect = 4.9
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -2
Query: 88 YKYLYSIYMYNSMC 47
YKY Y+ YN+ C
Sbjct: 96 YKYNYNNNNYNNNC 109
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 19.0 bits (37), Expect = 6.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 192 TIFITVLVLRQSARNTDTH 136
+I +TV+VL R+ TH
Sbjct: 321 SICVTVVVLNVHFRSPQTH 339
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 19.0 bits (37), Expect = 6.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 192 TIFITVLVLRQSARNTDTH 136
+I +TV+VL R+ TH
Sbjct: 321 SICVTVVVLNVHFRSPQTH 339
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 19.0 bits (37), Expect = 6.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 192 TIFITVLVLRQSARNTDTH 136
+I +TV+VL R+ TH
Sbjct: 317 SICVTVVVLNVHFRSPQTH 335
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 19.0 bits (37), Expect = 6.4
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = +2
Query: 17 SDYNQEDPSDTHTVV 61
++ DPSDT T++
Sbjct: 956 NEIGASDPSDTVTII 970
>AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter
Am-EAAT protein.
Length = 543
Score = 18.6 bits (36), Expect = 8.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -3
Query: 129 PRIHSGITTYVFNHINIYT 73
PRI S +T Y ++ I T
Sbjct: 165 PRIKSVVTAYKADYTKIST 183
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,514
Number of Sequences: 438
Number of extensions: 876
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used: 3039192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
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