Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18e23
(466 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743... 91 3e-19
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 77 7e-15
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 40 0.001
11_03_0144 + 10724538-10724753,10726127-10726186 32 0.26
11_04_0258 + 15489733-15490054,15490150-15490339,15490438-154909... 29 1.4
12_01_0855 + 8023266-8023459,8023830-8023866,8023911-8023966,802... 29 1.8
11_06_0588 + 25272067-25274850 29 1.8
04_04_0631 - 26728144-26728228,26728321-26728398,26728584-267286... 29 1.8
02_01_0053 + 397406-397609,398483-398561,398648-398742,399289-39... 27 5.6
03_02_0469 + 8720119-8720199,8720295-8720372,8720496-8720570,872... 27 9.8
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 27 9.8
>06_03_1059 +
27273267-27273316,27274077-27274163,27274245-27274392,
27274615-27274732,27274798-27274859
Length = 154
Score = 91.5 bits (217), Expect = 3e-19
Identities = 48/98 (48%), Positives = 65/98 (66%), Gaps = 3/98 (3%)
Frame = +1
Query: 181 RRAHETTTTIGPTIFDKIISKEIRADIIYEDDLCLAFNDIAPQAPVHFLVIPKRR--IAR 354
+ A T T GPTIFDKII+KEI ++++YED+ LAF DI PQAPVH LVIPK R +
Sbjct: 33 KAAAATADTGGPTIFDKIIAKEIPSNVVYEDEKVLAFRDINPQAPVHVLVIPKIRDGLTG 92
Query: 355 LQDAENNDNELLGHLMLVARSLGAQRA-PSGWRLVVNN 465
L AE E+LG+L+ A+ + + G+R+V+NN
Sbjct: 93 LDKAEPRHVEILGYLLYAAKIVAEKEGIAEGYRVVINN 130
>03_02_0838 +
11641484-11642030,11643614-11643650,11643784-11643841,
11646176-11646265,11646796-11646913,11648093-11648277,
11648330-11648455,11648578-11648634,11648741-11648821,
11649068-11649102,11649265-11649354,11649443-11649599,
11649785-11649901
Length = 565
Score = 77.0 bits (181), Expect = 7e-15
Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Frame = +1
Query: 211 GPTIFDKIISKEIRADIIYEDDLCLAFNDIAPQAPVHFLVIPKRR--IARLQDAENNDNE 384
G +FDKII KEI + ++++D+ LAF DI PQAP H ++IPK + + L AE E
Sbjct: 192 GSQVFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPKVKDGLTGLSKAEERHVE 251
Query: 385 LLGHLMLVARSLGAQRA-PSGWRLVVNN 465
+LG+L+ VA+ + Q G+R+V+N+
Sbjct: 252 ILGYLLYVAKVVAKQEGLEDGYRIVIND 279
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +1
Query: 220 IFDKIISKEIRADIIYEDDLCLAFNDIAPQAPVHFLVIPKRRIARLQ 360
+F +I+ A +YEDD+CL D P + H L+IPKR LQ
Sbjct: 74 VFCEIVKGNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSLQ 120
>11_03_0144 + 10724538-10724753,10726127-10726186
Length = 91
Score = 31.9 bits (69), Expect = 0.26
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 220 IFDKIISKEIRADIIYEDDLCLAFNDIAPQAP 315
+F +II E A +YEDD+CL D P AP
Sbjct: 59 VFCRIIRGEAPAFKVYEDDVCLCILDSHPLAP 90
>11_04_0258 +
15489733-15490054,15490150-15490339,15490438-15490910,
15501203-15501513
Length = 431
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 319 HFLVIPKRRIARLQDAENNDNELLGHLMLVARSLGAQRAPSGW 447
H ++ P + L+DAEN +++G LM QR GW
Sbjct: 99 HLVLPPGSNLRSLEDAENEAAKMIGVLMAPEYGRMLQRLVDGW 141
>12_01_0855 +
8023266-8023459,8023830-8023866,8023911-8023966,
8025102-8026215
Length = 466
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = +1
Query: 25 YXGVYLLVSTKMFNKVFQRALKFRLKKTYPTNIYDLSRGSAVAVK 159
+ G+Y ++S M +KVFQRAL+ K P +I D++R ++V+
Sbjct: 400 HQGMYSVISG-MVDKVFQRALR---KLPVPMSIRDMARQWGISVR 440
>11_06_0588 + 25272067-25274850
Length = 927
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = -2
Query: 336 WNNKKMYWRLRCYVVKSKT*IIFVYDIGSDLLRYDLVEYCGPD 208
WN +++ ++RCY ++ K ++ ++D+ D L +D ++ PD
Sbjct: 277 WNEEELVEKIRCY-LRGKIFLVILHDV-RDKLIWDHIKLAFPD 317
>04_04_0631 -
26728144-26728228,26728321-26728398,26728584-26728650,
26728748-26728824,26729961-26730012,26730248-26730294,
26730457-26730527
Length = 158
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 319 HFLVIPKRRIARLQDAENN--DNELLGHLMLVARSLGAQRAPS 441
H+LVIP I + + + D++L+ H++ V R L + AP+
Sbjct: 58 HYLVIPIEHIPTVNNLQRTTEDHQLVSHMLAVGRDLLNRDAPN 100
>02_01_0053 +
397406-397609,398483-398561,398648-398742,399289-399393,
399496-399575,399832-399922,400021-400128,400529-400615,
400862-400972
Length = 319
Score = 27.5 bits (58), Expect = 5.6
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Frame = +1
Query: 175 EVRRAHETTTTIGPTIFDKIISKEIRADIIYEDDLCLAFNDIAPQ--------APVHFLV 330
++RR + +T+ PT DK+ + RA + D AF PV+ V
Sbjct: 50 DLRRLQASLSTLAPTTLDKVEEELERARVTISDSDVAAFLPSKRNGKFLKTFVGPVNVRV 109
Query: 331 IPKRRIARLQDAENNDNELLGHLMLVARSL 420
K R++D NN + ++ L+ S+
Sbjct: 110 ARKEDKLRVKDEYNNYRDRAAYMFLLFPSI 139
>03_02_0469 +
8720119-8720199,8720295-8720372,8720496-8720570,
8720666-8720796,8720948-8721002,8721107-8721217,
8721538-8721606,8721687-8721794,8722106-8722174,
8722266-8722320,8722499-8722701
Length = 344
Score = 26.6 bits (56), Expect = 9.8
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 31 GVYLLVSTKMFNKVFQRALKFRLKKTYPTNIYDLSRGSAVAVKRPYSDEVR 183
G+Y +STK+ VF AL F +K+ L G+ VK+ S +R
Sbjct: 294 GLYKGMSTKIVQSVFASALLFMIKEELVKGARLLVTGNTSLVKKLPSKPLR 344
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 26.6 bits (56), Expect = 9.8
Identities = 35/115 (30%), Positives = 47/115 (40%), Gaps = 6/115 (5%)
Frame = +1
Query: 94 RLKKTYP-TNIYDLSRGSAVAVKRPYSDEVRRAHETTTTIGPTIFDKIISKEIRADIIYE 270
R +TY T D RG +A R +D VR T++GP DK+IS + II
Sbjct: 13 RKTETYTDTKRRDDVRGLNIAAARAVADAVR------TSLGPRGMDKMISSGEQEVIITN 66
Query: 271 DDLCLAFNDIAPQAPVHFLVIPKRRIARLQDAENNDNE-----LLGHLMLVARSL 420
D + Q L ++R QDA D L G L+ A+SL
Sbjct: 67 DGATILSRMSLLQPAARMLA----ELSRSQDAAAGDGTTTVVVLAGSLLRRAQSL 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,014,363
Number of Sequences: 37544
Number of extensions: 232938
Number of successful extensions: 750
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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