Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18e21
(526 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 35 0.006
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 34 0.011
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 33 0.020
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 32 0.046
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 32 0.060
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.32
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 28 0.74
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 28 0.74
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 0.74
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 27 1.7
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 3.0
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.0
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 4.0
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 4.0
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 25 5.2
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 9.1
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 35.1 bits (77), Expect = 0.006
Identities = 17/79 (21%), Positives = 40/79 (50%)
Frame = +3
Query: 285 ESWIAAIPGFALLFGNFTIPTIMGKYGRKVANIISVLPVIVGWLLITSASNTYFILAARF 464
+ +I + L G + +GRK I+ + +IVG ++ +A + + ++ RF
Sbjct: 129 KEFITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHMIVGRF 188
Query: 465 LQGISMGMSTSLGPILIGE 521
+ G +G+++ + P+ + E
Sbjct: 189 VIGWGVGIASLIIPLYLSE 207
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 34.3 bits (75), Expect = 0.011
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Frame = +3
Query: 165 FVTSGVA-ISMAQFGLVFGITAILIPQLQSQKPVMLIDESTESWIAAIPGFALLFGNFTI 341
+V S VA IS FG G+ + + L S +L E I + FA L T
Sbjct: 82 WVLSAVAGISGLLFGYDTGVISGALAVLGSDLGHVLSSGQKEL-ITSATSFAALISATTS 140
Query: 342 PTIMGKYGRKVANIISVLPVIVGWLLITSASNTYFILAARFLQGISMGMSTSLGPILIGE 521
+ GRK + + ++G +++ ++ N ++ RF+ G +G+++ + P+ I E
Sbjct: 141 GWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYITE 200
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 33.5 bits (73), Expect = 0.020
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = +3
Query: 273 DESTESWIAAIPGFALLFGNFTIPTI---MGKYGRKVANIISVLPVIVGWLLITSASNTY 443
D S+ SWI + +L N +P + GRK+ I + ++G L ++ N
Sbjct: 129 DTSSSSWIGSA---YVLASNAVLPAVGVFCNILGRKIVLYICIFFFMLGSALCGASQNMI 185
Query: 444 FILAARFLQGISMGMSTSLGPILIGE 521
+++ R +QG+ G SL I+I +
Sbjct: 186 WLIVCRAIQGLGGGGIISLVNIIISD 211
>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 448
Score = 32.3 bits (70), Expect = 0.046
Identities = 28/129 (21%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Frame = +3
Query: 138 WITPFVKQCFVTSGVAISMAQFGLVFGITAILIPQLQSQKPVMLID--ESTESWIAAIPG 311
W+ F+ +AI++ ++GI ++P + + D +S S + A+
Sbjct: 6 WVKQRRSLPFIIGTIAIALFTDLFLYGIITPILPFSLVDRVGISPDRVQSVISTLLAVYA 65
Query: 312 FALLFGNFTIPTIMGKY-GRKVANIISVLPVIVGWLLITSASNTYFILAARFLQGISMGM 488
A + + I + K+ RKV +I ++ + L+T ++ ++ AR LQG+S +
Sbjct: 66 VANIAASSPIGFLADKFLTRKVPMLIGLIFLTSATALLTFGNSVPMLIVARVLQGLSAAV 125
Query: 489 STSLGPILI 515
++G L+
Sbjct: 126 VWTVGLALL 134
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 31.9 bits (69), Expect = 0.060
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 363 GRKVANIISVLPVIVGWLLITSASNTYFILAARFLQGISMGMSTSLGPILIGE 521
GRK+ S++ + G + +A N +++ R +QGI G TSL I+I +
Sbjct: 153 GRKIVLYTSIVLFLFGSAMCGAAQNMLWLVLCRAVQGIGGGGITSLVTIVIAD 205
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 29.5 bits (63), Expect = 0.32
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 363 GRKVANIISVLPVIVGWLLITSASNTYFILAARFLQGISMGMSTSLGPILIGE 521
GRK+ S++ + G + +A N +++ R +QGI G SL I+I +
Sbjct: 153 GRKIVLYTSIVLFLFGSAMCGAAQNMLWLVLCRAVQGIGGGGIMSLVTIVIAD 205
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 28.3 bits (60), Expect = 0.74
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +3
Query: 297 AAIPGFALLFGNFTIPTIMGKYGRKVANIISVLPVIVGWLLITSASNTYFILAARFLQGI 476
A + +LFGN + ++GR+ +I + + I + N L RF G+
Sbjct: 84 ATLYTLGILFGNLIFAPLSEQFGRRPIYLIGYSVFALLQIPIALSVNLAMFLVFRFFSGL 143
Query: 477 --SMGMSTSLGPI 509
S+G+S G +
Sbjct: 144 FGSVGLSNGSGSL 156
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 28.3 bits (60), Expect = 0.74
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +3
Query: 297 AAIPGFALLFGNFTIPTIMGKYGRKVANIISVLPVIVGWLLITSASNTYFILAARFLQGI 476
A + +LFGN + ++GR+ +I + + I + N L RF G+
Sbjct: 84 ATLYTLGILFGNLIFAPLSEQFGRRPIYLIGYSVFALLQIPIALSVNLAMFLVFRFFSGL 143
Query: 477 --SMGMSTSLGPI 509
S+G+S G +
Sbjct: 144 FGSVGLSNGSGSL 156
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 28.3 bits (60), Expect = 0.74
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +3
Query: 297 AAIPGFALLFGNFTIPTIMGKYGRKVANIISVLPVIVGWLLITSASNTYFILAARFLQGI 476
A + +LFGN + ++GR+ +I + + I + N L RF G+
Sbjct: 84 ATLYTLGILFGNLIFAPLSEQFGRRPIYLIGYSVFALLQIPIALSVNLAMFLVFRFFSGL 143
Query: 477 --SMGMSTSLGPI 509
S+G+S G +
Sbjct: 144 FGSVGLSNGSGSL 156
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 386 QCSARNRRLAVNHKRLQHIL--HLGCKISSRDLYGNE 490
+CS+ + R+ + + ++HIL HLG + R + NE
Sbjct: 583 ECSSPDERIRIPQRIIRHILNRHLGNNVGDRVSFRNE 619
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +3
Query: 93 FLLFFVFSFHNKMVRWITPFVKQCFVTSGVAISMAQFGLVFGITAILIPQLQSQKPVMLI 272
+LLFF + H ++ W+ F K+ + + IS A VF T + Q S +
Sbjct: 164 YLLFFYEASHPDVLEWVHSFFKE---NTEIRISSATVDAVFN-TVVFESQNSSDSDCNFV 219
Query: 273 D-ESTESW 293
S E W
Sbjct: 220 SISSPEFW 227
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 3.0
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = +3
Query: 288 SWIAAIPGFALLFGNFTIPTIMGKYGRKVANIISVLPVIVGWLLITSASNTYFILAARFL 467
+++ + F LFG F YGRK + + +G L ++ + + ++AAR +
Sbjct: 132 AYMISCTAFQPLFGKFC-----DIYGRKKTLLAAYCVFGIGCFLCGTSRSLWQLVAARAI 186
Query: 468 QGISMGMSTSLGPILIGE 521
GI G S IL+ +
Sbjct: 187 AGIGGGGMNSTVSILMSD 204
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 446 HLGCKISSRDLYGNEHIIGTDLDW 517
++GC S D YG+ GT DW
Sbjct: 240 YVGCYDSDFDQYGDTEAFGTHPDW 263
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.8 bits (54), Expect = 4.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 452 GCKISSRDLYGNEHIIGTDLDWR 520
GC +S D YG+ G+ DW+
Sbjct: 250 GCYVSDYDHYGDTEAFGSHPDWQ 272
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +3
Query: 78 RLNYYFLLFFVFSFHNKMVRWITPFVKQCFVTSGV 182
++NY+ FF FSF + +++++ ++ + S V
Sbjct: 258 QINYFLWFFFFFSFPSYIIKYLMSHSRRSKLLSAV 292
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 24.6 bits (51), Expect = 9.1
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +2
Query: 332 LHYTYHHGQIWTKSRQHHQCSARNRRLAVNHKRLQHILHLGCKI--SSRDLYGNEHII 499
LH+ YHH + W + + ++RRL + L+ +G KI S DL G E +
Sbjct: 824 LHFEYHHEKYWPQLVE----LCKSRRLGI----LEKWRKMGSKIGTSEWDLKGGEEYV 873
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,093
Number of Sequences: 5004
Number of extensions: 45250
Number of successful extensions: 132
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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